| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is yejM [H]
Identifier: 218708945
GI number: 218708945
Start: 976047
End: 977843
Strand: Reverse
Name: yejM [H]
Synonym: VS_0949
Alternate gene names: 218708945
Gene position: 977843-976047 (Counterclockwise)
Preceding gene: 218708946
Following gene: 218708940
Centisome position: 29.64
GC content: 43.57
Gene sequence:
>1797_bases ATGGTAGACAGCGCAAACTCATATAGCGATCGTGTATCTCGACTGGTAGGTTGGGGCCACTGGTTTGCATTTTTCAACAT CATTGCTGCGATGTTGATTGGTACTCGTTATATTACTCAATCTGCTTGGCCGGAAACCCTATTGGGTCAATTCTATTTGG CTGCATCATGGGTTGGTCATTTTGGATTTTTGGTGTTCGCGCTTTATCTATTAGTGCTGTTCCCACTCACTTTTATTCTT CCGTCGAGGAAGTTATTACGTTTGGTTGCCGTTATCTTCGCAACCATAGGTTTAACTGTCCTACTGATTGATACTCAAAC GTATCAAAATATAAACCTCCACCTGACACCTGTCGTGTGGGAGGTTTTATTCAGTGGAGAGGAGTCTGCACTCACTTCTG ATTTGCAGCACCTCTTCATTGTAATGCCACTAATCTTCTTATTGCAGCTAGGTCTGTCTGAGTGGGTTTGGCGTAAGCAA CGTAAACTGTCTCATAAACACATTGGCCGTCCTATTACTGCCGTCTTCTTCTTGTGTTTCATCAGCAGCCACTTGACCTA CATGTGGGCTGATGCGTATTTCTACAACCCAATTACAAGCCAGAAAGCGAATTTCCCACTGTCTTATCCTATGACAGCAA AAAGCTTTATGGAAAAGCATGGTCTATTAGACCGTGAAGAGTATTTACAGCGTTTAGAAGCGAACCAAGAGAACGTAAAC TTAGTTAGCTACCCGCTAGAAAAAATTCAATACAACCGCCGCAGTGCTGATCTTAATATTCTGCTTGTGAGTGTGAATAA TCTTCGCGCTGATGCTCTCAATAGCACTGCAATGCCAAGCAGCTATGCCTATGCACAACAATCGATCAACTTCACTAATC ACTACAGTTCAAGTAACGACATGTTTGGTATTTTCGGATTGTTCTATGGCCTTCCTAGCAGTTACGCAAGCAGCATCAAA GCACAAGGTTCGAGCGCAGTACTGCTCGATGTGCTAGATCATCACAATTATACACTTGCCGCTTTTAGCGGTGATGACTT TGACGACGCCCTTTACCCGGAAGTCATCTTCCGAGGCCGTGATGCGCTCCCAGAGCAAGCAACAGATGATGACCAAAGCG CAATACAAGCTTGGTCTGAATGGGTTCAATCACCACAAGCAAAAAGCCCTTGGTTTAACTTTATTGAGCTAACAACGCTC GATAACTTCTCTAGTTACGAAACAGATGTGACGTTGACTACCGCTGAACGTTTTACTGCAGATTACCAAAAATCGACTCA AGCGGCTGATGTTCAGTTAACGAAAATCTACGCAGAGTTGGAGCGCCTAGATCTTCAAGACAACACAGTGGTTATCATTA CCTCTAACCATGGTACTGAATTTAACGAGACGAAAACCAACAGTTGGGGCGCAAACTCCAATTACAGTCGTTACCAACTA CAAGTGCCTCTGTTCATCAAATGGCCAGGTAAGTCAGCATCTGAATATACTCACCGTTCTAGTCACCTAGATGTGTCAGT CACGCTAATGCAAGAGCTATTAGGTGTATCTTCGAACCCTACAGATTTCAGTAGTGGACGTAGCCTGTTTGATGAGCGTA GAAGAAAATGGATTCTTGCAGGAGACTCACGTGAACTTGCTCTTGTTACTGACCAACAAACAACGGTGTTAGATAAGTTT GGTAACTACAAATTGTACGATCAGAATTACAAACGTCTGAAAGATGTAAGCCCTCGCTTGCCAGTGTTGATGCAAGGCCT TACTGAGTTACAGCGGTTCTATACCAAAAATGACTAA
Upstream 100 bases:
>100_bases ACAACGCAAAGGAATTGCTGAAAAATTTGCCGAAGCTTTAATTTCTTCTCTTGAAGATAAAAAGTCTCACTAAGTTTGAT TGACGGAAAAAGAATTATAA
Downstream 100 bases:
>100_bases ATGATCATCAAAAAGAAAAGGGAAGCCAATGGCTTCCCTTTTTTATTGCCGTGAATGATTAGAAAACAAGCAACAAAACA AAATTATGAAAATTAAGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 598; Mature: 598
Protein sequence:
>598_residues MVDSANSYSDRVSRLVGWGHWFAFFNIIAAMLIGTRYITQSAWPETLLGQFYLAASWVGHFGFLVFALYLLVLFPLTFIL PSRKLLRLVAVIFATIGLTVLLIDTQTYQNINLHLTPVVWEVLFSGEESALTSDLQHLFIVMPLIFLLQLGLSEWVWRKQ RKLSHKHIGRPITAVFFLCFISSHLTYMWADAYFYNPITSQKANFPLSYPMTAKSFMEKHGLLDREEYLQRLEANQENVN LVSYPLEKIQYNRRSADLNILLVSVNNLRADALNSTAMPSSYAYAQQSINFTNHYSSSNDMFGIFGLFYGLPSSYASSIK AQGSSAVLLDVLDHHNYTLAAFSGDDFDDALYPEVIFRGRDALPEQATDDDQSAIQAWSEWVQSPQAKSPWFNFIELTTL DNFSSYETDVTLTTAERFTADYQKSTQAADVQLTKIYAELERLDLQDNTVVIITSNHGTEFNETKTNSWGANSNYSRYQL QVPLFIKWPGKSASEYTHRSSHLDVSVTLMQELLGVSSNPTDFSSGRSLFDERRRKWILAGDSRELALVTDQQTTVLDKF GNYKLYDQNYKRLKDVSPRLPVLMQGLTELQRFYTKND
Sequences:
>Translated_598_residues MVDSANSYSDRVSRLVGWGHWFAFFNIIAAMLIGTRYITQSAWPETLLGQFYLAASWVGHFGFLVFALYLLVLFPLTFIL PSRKLLRLVAVIFATIGLTVLLIDTQTYQNINLHLTPVVWEVLFSGEESALTSDLQHLFIVMPLIFLLQLGLSEWVWRKQ RKLSHKHIGRPITAVFFLCFISSHLTYMWADAYFYNPITSQKANFPLSYPMTAKSFMEKHGLLDREEYLQRLEANQENVN LVSYPLEKIQYNRRSADLNILLVSVNNLRADALNSTAMPSSYAYAQQSINFTNHYSSSNDMFGIFGLFYGLPSSYASSIK AQGSSAVLLDVLDHHNYTLAAFSGDDFDDALYPEVIFRGRDALPEQATDDDQSAIQAWSEWVQSPQAKSPWFNFIELTTL DNFSSYETDVTLTTAERFTADYQKSTQAADVQLTKIYAELERLDLQDNTVVIITSNHGTEFNETKTNSWGANSNYSRYQL QVPLFIKWPGKSASEYTHRSSHLDVSVTLMQELLGVSSNPTDFSSGRSLFDERRRKWILAGDSRELALVTDQQTTVLDKF GNYKLYDQNYKRLKDVSPRLPVLMQGLTELQRFYTKND >Mature_598_residues MVDSANSYSDRVSRLVGWGHWFAFFNIIAAMLIGTRYITQSAWPETLLGQFYLAASWVGHFGFLVFALYLLVLFPLTFIL PSRKLLRLVAVIFATIGLTVLLIDTQTYQNINLHLTPVVWEVLFSGEESALTSDLQHLFIVMPLIFLLQLGLSEWVWRKQ RKLSHKHIGRPITAVFFLCFISSHLTYMWADAYFYNPITSQKANFPLSYPMTAKSFMEKHGLLDREEYLQRLEANQENVN LVSYPLEKIQYNRRSADLNILLVSVNNLRADALNSTAMPSSYAYAQQSINFTNHYSSSNDMFGIFGLFYGLPSSYASSIK AQGSSAVLLDVLDHHNYTLAAFSGDDFDDALYPEVIFRGRDALPEQATDDDQSAIQAWSEWVQSPQAKSPWFNFIELTTL DNFSSYETDVTLTTAERFTADYQKSTQAADVQLTKIYAELERLDLQDNTVVIITSNHGTEFNETKTNSWGANSNYSRYQL QVPLFIKWPGKSASEYTHRSSHLDVSVTLMQELLGVSSNPTDFSSGRSLFDERRRKWILAGDSRELALVTDQQTTVLDKF GNYKLYDQNYKRLKDVSPRLPVLMQGLTELQRFYTKND
Specific function: Unknown
COG id: COG3083
COG function: function code R; Predicted hydrolase of alkaline phosphatase superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0842 [H]
Homologues:
Organism=Escherichia coli, GI1788515, Length=599, Percent_Identity=39.7328881469115, Blast_Score=452, Evalue=1e-128,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR012159 - InterPro: IPR000917 [H]
Pfam domain/function: PF00884 Sulfatase [H]
EC number: NA
Molecular weight: Translated: 68333; Mature: 68333
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDSANSYSDRVSRLVGWGHWFAFFNIIAAMLIGTRYITQSAWPETLLGQFYLAASWVGH CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH FGFLVFALYLLVLFPLTFILPSRKLLRLVAVIFATIGLTVLLIDTQTYQNINLHLTPVVW HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCEEEHHHHH EVLFSGEESALTSDLQHLFIVMPLIFLLQLGLSEWVWRKQRKLSHKHIGRPITAVFFLCF HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ISSHLTYMWADAYFYNPITSQKANFPLSYPMTAKSFMEKHGLLDREEYLQRLEANQENVN HHHHHHEEEEHHHEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCE LVSYPLEKIQYNRRSADLNILLVSVNNLRADALNSTAMPSSYAYAQQSINFTNHYSSSND EEECCHHHHHCCCCCCCEEEEEEEECCCCHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCC MFGIFGLFYGLPSSYASSIKAQGSSAVLLDVLDHHNYTLAAFSGDDFDDALYPEVIFRGR CHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHCCC DALPEQATDDDQSAIQAWSEWVQSPQAKSPWFNFIELTTLDNFSSYETDVTLTTAERFTA CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEHHHHHH DYQKSTQAADVQLTKIYAELERLDLQDNTVVIITSNHGTEFNETKTNSWGANSNYSRYQL HHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE QVPLFIKWPGKSASEYTHRSSHLDVSVTLMQELLGVSSNPTDFSSGRSLFDERRRKWILA EEEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCEEEEE GDSRELALVTDQQTTVLDKFGNYKLYDQNYKRLKDVSPRLPVLMQGLTELQRFYTKND CCCCCEEEEECCHHHHHHHCCCEEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MVDSANSYSDRVSRLVGWGHWFAFFNIIAAMLIGTRYITQSAWPETLLGQFYLAASWVGH CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH FGFLVFALYLLVLFPLTFILPSRKLLRLVAVIFATIGLTVLLIDTQTYQNINLHLTPVVW HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCEEEHHHHH EVLFSGEESALTSDLQHLFIVMPLIFLLQLGLSEWVWRKQRKLSHKHIGRPITAVFFLCF HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH ISSHLTYMWADAYFYNPITSQKANFPLSYPMTAKSFMEKHGLLDREEYLQRLEANQENVN HHHHHHEEEEHHHEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCE LVSYPLEKIQYNRRSADLNILLVSVNNLRADALNSTAMPSSYAYAQQSINFTNHYSSSND EEECCHHHHHCCCCCCCEEEEEEEECCCCHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCC MFGIFGLFYGLPSSYASSIKAQGSSAVLLDVLDHHNYTLAAFSGDDFDDALYPEVIFRGR CHHHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHCCC DALPEQATDDDQSAIQAWSEWVQSPQAKSPWFNFIELTTLDNFSSYETDVTLTTAERFTA CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEHHHHHH DYQKSTQAADVQLTKIYAELERLDLQDNTVVIITSNHGTEFNETKTNSWGANSNYSRYQL HHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE QVPLFIKWPGKSASEYTHRSSHLDVSVTLMQELLGVSSNPTDFSSGRSLFDERRRKWILA EEEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCEEEEE GDSRELALVTDQQTTVLDKFGNYKLYDQNYKRLKDVSPRLPVLMQGLTELQRFYTKND CCCCCEEEEECCHHHHHHHCCCEEEECCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]