| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708862
Identifier: 218708862
GI number: 218708862
Start: 882673
End: 883401
Strand: Reverse
Name: 218708862
Synonym: VS_0862
Alternate gene names: NA
Gene position: 883401-882673 (Counterclockwise)
Preceding gene: 218708863
Following gene: 218708861
Centisome position: 26.78
GC content: 43.62
Gene sequence:
>729_bases ATGGATGATTTGGAATTTCGTCGTCGTGTATTGTCGGAACCTAAGCAACGTACACAAGACATTATTGATGCAGCAGCGAA TAGTGAAGCCAATAGTAATTTATTAGACGATGTACTATCACTTGATAAGCAAATCCATTCAGCATTGAATGTGGATGTGC CAGACGATCTGGCAGATCGTATCCTATTCAATCAGACCTCAAGCGAAGAGAGCAAAGTAGTAAGGCCTACGTTTGCTCGA CGAGCGATGGCAATGGCTGCTTCTGTGGCATTCGTTGCAGGTTTATTGGTTGGTCAAGTCAACTGGAGCAACGCGTTGGT ATCTCCAGCTCAAGCAAGCTTGGCGGATACTGCAATGAAACATGTTGTTGATGAAAAGAGCTTCGTTAGTGCACTTGATG AAAATGTATCATCTCAACAAATCAATGCAAAAATGAACCCGTTTGCTTTTCAGTTTGATGAAGCCTTCCCTTACCACGTC TATTACCTGAACCACTGTGGTTTTGGCAAATCCAACGCAATGCACATGGTTTTCCAAGGCGAAAAAGGCAAAGTCACGCT GTTTTTAACTGGCATTCCGACTGACAAGTCTATCGACTTTGATGAAAAAGGCATGTCAGGCTCGGTAACACCGATCGATG GCAGCAGTTTGATCCTTGTAGGGGAAGATGGCGAGGATGTCTCTAAAATCGCCGAAAAGCTGACAAAAATGATCAAACCA ATGACCTAA
Upstream 100 bases:
>100_bases CTCGATCTTAACAAAAATACGGTGATGACACGTTTATTCAGAGCTCGAAATCAGTTGAAAGAGATGCTGGATACAGAAGA GGCAGAGAGGGGGCAACATA
Downstream 100 bases:
>100_bases TTTGCTCTCAAAGCCCCGTAACAAAAGGCCCAGCAAGTATATCACTGAATCCTGATATTGCTGGGCTTTATTTATCAATA AATCGCAAAACCATTCACCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MDDLEFRRRVLSEPKQRTQDIIDAAANSEANSNLLDDVLSLDKQIHSALNVDVPDDLADRILFNQTSSEESKVVRPTFAR RAMAMAASVAFVAGLLVGQVNWSNALVSPAQASLADTAMKHVVDEKSFVSALDENVSSQQINAKMNPFAFQFDEAFPYHV YYLNHCGFGKSNAMHMVFQGEKGKVTLFLTGIPTDKSIDFDEKGMSGSVTPIDGSSLILVGEDGEDVSKIAEKLTKMIKP MT
Sequences:
>Translated_242_residues MDDLEFRRRVLSEPKQRTQDIIDAAANSEANSNLLDDVLSLDKQIHSALNVDVPDDLADRILFNQTSSEESKVVRPTFAR RAMAMAASVAFVAGLLVGQVNWSNALVSPAQASLADTAMKHVVDEKSFVSALDENVSSQQINAKMNPFAFQFDEAFPYHV YYLNHCGFGKSNAMHMVFQGEKGKVTLFLTGIPTDKSIDFDEKGMSGSVTPIDGSSLILVGEDGEDVSKIAEKLTKMIKP MT >Mature_242_residues MDDLEFRRRVLSEPKQRTQDIIDAAANSEANSNLLDDVLSLDKQIHSALNVDVPDDLADRILFNQTSSEESKVVRPTFAR RAMAMAASVAFVAGLLVGQVNWSNALVSPAQASLADTAMKHVVDEKSFVSALDENVSSQQINAKMNPFAFQFDEAFPYHV YYLNHCGFGKSNAMHMVFQGEKGKVTLFLTGIPTDKSIDFDEKGMSGSVTPIDGSSLILVGEDGEDVSKIAEKLTKMIKP MT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26494; Mature: 26494
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDLEFRRRVLSEPKQRTQDIIDAAANSEANSNLLDDVLSLDKQIHSALNVDVPDDLADR CCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH ILFNQTSSEESKVVRPTFARRAMAMAASVAFVAGLLVGQVNWSNALVSPAQASLADTAMK HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHH HVVDEKSFVSALDENVSSQQINAKMNPFAFQFDEAFPYHVYYLNHCGFGKSNAMHMVFQG HHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEC EKGKVTLFLTGIPTDKSIDFDEKGMSGSVTPIDGSSLILVGEDGEDVSKIAEKLTKMIKP CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCC MT CC >Mature Secondary Structure MDDLEFRRRVLSEPKQRTQDIIDAAANSEANSNLLDDVLSLDKQIHSALNVDVPDDLADR CCHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH ILFNQTSSEESKVVRPTFARRAMAMAASVAFVAGLLVGQVNWSNALVSPAQASLADTAMK HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHH HVVDEKSFVSALDENVSSQQINAKMNPFAFQFDEAFPYHVYYLNHCGFGKSNAMHMVFQG HHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEC EKGKVTLFLTGIPTDKSIDFDEKGMSGSVTPIDGSSLILVGEDGEDVSKIAEKLTKMIKP CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCC MT CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA