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The map label for this gene is rpoE [C]

Identifier: 218708863

GI number: 218708863

Start: 883394

End: 883969

Strand: Reverse

Name: rpoE [C]

Synonym: VS_0863

Alternate gene names: 218708863

Gene position: 883969-883394 (Counterclockwise)

Preceding gene: 218708866

Following gene: 218708862

Centisome position: 26.79

GC content: 43.75

Gene sequence:

>576_bases
ATGGAGGCTCGTGTGTCAATAATAAAAATGTTTGGAAAGAAAACAGCCAAGCGTCCGGTCAACTCTGATATGGACAAACA
AAGAAAATACGAAGCACTCGTGCGCGCCTATCATCGTGACCTCTTTCGCTATGCCTATTGGCTATGCAAAGACAAAAGCA
TTGCCGAAGATTTAGTTCAAGAAACTTGCCTTCGTGCATGGAAGTCACTCGATAGCCTACAAGATGAAAAAGCCGCAAAG
TCATGGCTGATTACTATCTTGCGCCGCGAGAATGCTCGACGTTTTGAACGCAAACAATTTGATCTGGTTGATATCGACGA
TCATGGTAACGATGCTAGCATCAGTGATGACCCACATCATCAACACCAATGGTTGCAAGCGCAGATCATGAAACTTGAAA
TCGAATACCGTGAACCCCTCTTCTTACAAGTGATTGGTGGTTTTAGTGGTGATGAGATCGCCGATATTCTCGATCTTAAC
AAAAATACGGTGATGACACGTTTATTCAGAGCTCGAAATCAGTTGAAAGAGATGCTGGATACAGAAGAGGCAGAGAGGGG
GCAACATAATGGATGA

Upstream 100 bases:

>100_bases
TAATGTGATTTTACGACTTCCTGCCGACGTTAGCCCTAAAAACGAAACAGCATATGTAACGAAGCACAACGTATAGAAGA
CAGCTATACGCAGAGCAATT

Downstream 100 bases:

>100_bases
TTTGGAATTTCGTCGTCGTGTATTGTCGGAACCTAAGCAACGTACACAAGACATTATTGATGCAGCAGCGAATAGTGAAG
CCAATAGTAATTTATTAGAC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor RpoE; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Factor Sigma C; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Subunit Ecf Family; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigX; ECF-Type Sigma Factor; RNA Polymerase Sigma-24 Subunit RpoE; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma-24 Subunit Rpoe; RNA Polymerase Sigma Factor SigW; Sigma Factor; ECF SubfamilyRNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MEARVSIIKMFGKKTAKRPVNSDMDKQRKYEALVRAYHRDLFRYAYWLCKDKSIAEDLVQETCLRAWKSLDSLQDEKAAK
SWLITILRRENARRFERKQFDLVDIDDHGNDASISDDPHHQHQWLQAQIMKLEIEYREPLFLQVIGGFSGDEIADILDLN
KNTVMTRLFRARNQLKEMLDTEEAERGQHNG

Sequences:

>Translated_191_residues
MEARVSIIKMFGKKTAKRPVNSDMDKQRKYEALVRAYHRDLFRYAYWLCKDKSIAEDLVQETCLRAWKSLDSLQDEKAAK
SWLITILRRENARRFERKQFDLVDIDDHGNDASISDDPHHQHQWLQAQIMKLEIEYREPLFLQVIGGFSGDEIADILDLN
KNTVMTRLFRARNQLKEMLDTEEAERGQHNG
>Mature_191_residues
MEARVSIIKMFGKKTAKRPVNSDMDKQRKYEALVRAYHRDLFRYAYWLCKDKSIAEDLVQETCLRAWKSLDSLQDEKAAK
SWLITILRRENARRFERKQFDLVDIDDHGNDASISDDPHHQHQWLQAQIMKLEIEYREPLFLQVIGGFSGDEIADILDLN
KNTVMTRLFRARNQLKEMLDTEEAERGQHNG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22569; Mature: 22569

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEARVSIIKMFGKKTAKRPVNSDMDKQRKYEALVRAYHRDLFRYAYWLCKDKSIAEDLVQ
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ETCLRAWKSLDSLQDEKAAKSWLITILRRENARRFERKQFDLVDIDDHGNDASISDDPHH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHH
QHQWLQAQIMKLEIEYREPLFLQVIGGFSGDEIADILDLNKNTVMTRLFRARNQLKEMLD
HHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TEEAERGQHNG
HHHHHCCCCCC
>Mature Secondary Structure
MEARVSIIKMFGKKTAKRPVNSDMDKQRKYEALVRAYHRDLFRYAYWLCKDKSIAEDLVQ
CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ETCLRAWKSLDSLQDEKAAKSWLITILRRENARRFERKQFDLVDIDDHGNDASISDDPHH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHH
QHQWLQAQIMKLEIEYREPLFLQVIGGFSGDEIADILDLNKNTVMTRLFRARNQLKEMLD
HHHHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TEEAERGQHNG
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA