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The map label for this gene is ydaM [H]

Identifier: 218708647

GI number: 218708647

Start: 648039

End: 649034

Strand: Direct

Name: ydaM [H]

Synonym: VS_0625

Alternate gene names: 218708647

Gene position: 648039-649034 (Clockwise)

Preceding gene: 218708646

Following gene: 218708648

Centisome position: 19.64

GC content: 43.07

Gene sequence:

>996_bases
ATGAAACAACAATTTTTATTAGAAGGTCACCGAGCAGTAAACAGTTTGCTTCGAAAGCTTGCCCTTGGGTTGGATCGCAA
AGAATTAAATCGCAAGATCATTCAACTCACCGAGCAGATTTTTGGTCAAAGGATGGCCTCTATCCTATTGCTAAACCCCG
AATCGAATACATTACATTTAGAATATGCTCCAAACTTGCCTGATTTTTATAACCAGCAGATAGAAGGGGTGGGGGTTGGT
GCCGGAATTGGTTCTTGTGGCGAAGCGGCGGCACTTAAGAAAGCTGTCATGGTCTCCAATATTAATGCACACCCGAATTG
GACTCCTTTCTTAGCCTTAACCAATCAGGCCAATCTTCATGCATGTTGGTCAGTGCCAATCATCTCTTCACATGGTCACG
TATTAGGTACCTTCGCAATTTACAGTCAGTACATCTCTGAACCTCATGAGTTTGAACTTGAGATCTTAGAGTTATTGGCT
TCTCTGTATTCAGTCGCGCTTGAGAAGTATGAGTTAGAGAATCAACTCAACTTTTTTGCCAATCGGGACTCCCTAACACA
CTGTTTGAATCGCCGAGCATTGCTGAGAGAAGCCGAGCAGGTGTTAACTAACCGCTGTTTTACTGAAAAAGTGATGGCAT
GCCTGTTTGTTGATGTCGATAAATTTAAGTCAATAAACGATACGTTTGGCCACAGCTTTGGTGATGATGTGTTATTAGCC
GTTGCAAAAGTGCTTGATGAGGCAACGACTGCCTGTGCCAAGATAGGGCGCTATGGGGGCGATGAGTTTGTCGTGTTCTC
TTGCTTCGATGATCAAGAAAGTGTGCTGAACTTTTATCTAAGCTTAGAAAGAACCTTGGAACAAGCGCTCTATATCGATG
GCACTCAGTTTTCTGTCAGCGTTGGACTTTCTTATGATAAAGATCCTGAGTCATTGGAAGGCTTGATCGCACAAGCTGAT
AAGAACATGTACCAAATCAAGCAAGCTAAGTCTTAG

Upstream 100 bases:

>100_bases
TCGGTGGTGTGTTGTGGTAATTTAGTGTGTTAATATTGACCAGTATATAGGCTTGCATAAGAACAAGCTGTTCCCACCAT
ATAATTGAAAGCTTTAGTGA

Downstream 100 bases:

>100_bases
CAGTAGTAGATTGTAAAAAAAGTAGTGAATTAGGAAATGCTAATGAGTGAAAATATCTGCCCTAAGTGCCAATCAGAGCT
AGGTTGGGATGGAAAGTATC

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKQQFLLEGHRAVNSLLRKLALGLDRKELNRKIIQLTEQIFGQRMASILLLNPESNTLHLEYAPNLPDFYNQQIEGVGVG
AGIGSCGEAAALKKAVMVSNINAHPNWTPFLALTNQANLHACWSVPIISSHGHVLGTFAIYSQYISEPHEFELEILELLA
SLYSVALEKYELENQLNFFANRDSLTHCLNRRALLREAEQVLTNRCFTEKVMACLFVDVDKFKSINDTFGHSFGDDVLLA
VAKVLDEATTACAKIGRYGGDEFVVFSCFDDQESVLNFYLSLERTLEQALYIDGTQFSVSVGLSYDKDPESLEGLIAQAD
KNMYQIKQAKS

Sequences:

>Translated_331_residues
MKQQFLLEGHRAVNSLLRKLALGLDRKELNRKIIQLTEQIFGQRMASILLLNPESNTLHLEYAPNLPDFYNQQIEGVGVG
AGIGSCGEAAALKKAVMVSNINAHPNWTPFLALTNQANLHACWSVPIISSHGHVLGTFAIYSQYISEPHEFELEILELLA
SLYSVALEKYELENQLNFFANRDSLTHCLNRRALLREAEQVLTNRCFTEKVMACLFVDVDKFKSINDTFGHSFGDDVLLA
VAKVLDEATTACAKIGRYGGDEFVVFSCFDDQESVLNFYLSLERTLEQALYIDGTQFSVSVGLSYDKDPESLEGLIAQAD
KNMYQIKQAKS
>Mature_331_residues
MKQQFLLEGHRAVNSLLRKLALGLDRKELNRKIIQLTEQIFGQRMASILLLNPESNTLHLEYAPNLPDFYNQQIEGVGVG
AGIGSCGEAAALKKAVMVSNINAHPNWTPFLALTNQANLHACWSVPIISSHGHVLGTFAIYSQYISEPHEFELEILELLA
SLYSVALEKYELENQLNFFANRDSLTHCLNRRALLREAEQVLTNRCFTEKVMACLFVDVDKFKSINDTFGHSFGDDVLLA
VAKVLDEATTACAKIGRYGGDEFVVFSCFDDQESVLNFYLSLERTLEQALYIDGTQFSVSVGLSYDKDPESLEGLIAQAD
KNMYQIKQAKS

Specific function: Unknown

COG id: COG2203

COG function: function code T; FOG: GAF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=164, Percent_Identity=31.0975609756098, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788956, Length=199, Percent_Identity=34.1708542713568, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=30.4597701149425, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=333, Percent_Identity=25.8258258258258, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI145693134, Length=150, Percent_Identity=31.3333333333333, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787056, Length=168, Percent_Identity=30.952380952381, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=33.1360946745562, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788381, Length=96, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=171, Percent_Identity=30.4093567251462, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787541, Length=166, Percent_Identity=28.9156626506024, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 37026; Mature: 37026

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQQFLLEGHRAVNSLLRKLALGLDRKELNRKIIQLTEQIFGQRMASILLLNPESNTLHL
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEE
EYAPNLPDFYNQQIEGVGVGAGIGSCGEAAALKKAVMVSNINAHPNWTPFLALTNQANLH
EECCCCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEE
ACWSVPIISSHGHVLGTFAIYSQYISEPHEFELEILELLASLYSVALEKYELENQLNFFA
EEEECEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NRDSLTHCLNRRALLREAEQVLTNRCFTEKVMACLFVDVDKFKSINDTFGHSFGDDVLLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHH
VAKVLDEATTACAKIGRYGGDEFVVFSCFDDQESVLNFYLSLERTLEQALYIDGTQFSVS
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHEECCCEEEEE
VGLSYDKDPESLEGLIAQADKNMYQIKQAKS
ECCCCCCCHHHHHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure
MKQQFLLEGHRAVNSLLRKLALGLDRKELNRKIIQLTEQIFGQRMASILLLNPESNTLHL
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEE
EYAPNLPDFYNQQIEGVGVGAGIGSCGEAAALKKAVMVSNINAHPNWTPFLALTNQANLH
EECCCCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEE
ACWSVPIISSHGHVLGTFAIYSQYISEPHEFELEILELLASLYSVALEKYELENQLNFFA
EEEECEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NRDSLTHCLNRRALLREAEQVLTNRCFTEKVMACLFVDVDKFKSINDTFGHSFGDDVLLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHH
VAKVLDEATTACAKIGRYGGDEFVVFSCFDDQESVLNFYLSLERTLEQALYIDGTQFSVS
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHEECCCEEEEE
VGLSYDKDPESLEGLIAQADKNMYQIKQAKS
ECCCCCCCHHHHHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]