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The map label for this gene is capD [H]

Identifier: 218708296

GI number: 218708296

Start: 227666

End: 229597

Strand: Direct

Name: capD [H]

Synonym: VS_0234

Alternate gene names: 218708296

Gene position: 227666-229597 (Clockwise)

Preceding gene: 218708295

Following gene: 218708297

Centisome position: 6.9

GC content: 42.34

Gene sequence:

>1932_bases
ATGCAACGTCTAAATTTTATCTGGCACTTATCTCGCGTACATAAGCGCGGTATCAGTGTTATTATTGATAGCTTTTTTAT
TATTTTTTCTTTACATGCAGCGTTGTGGACGAGATTAGGTGATGTAAGGTTTTTGAATGATAGTGATAATTTGTTACTGA
TAGGCTTAACCGTAATATCAACTGTTCTTATTTTTACTAAGATAGGACTCTATCGCGCAGTTCTCAGGTATCTTACTTTT
CAAGCACTCTTCGTTGTCACTTCAGGAGCAATCTTGTCTGCGTTAGCCTTGGCTGTATTTGCTTATTACCTTCAAGAGCC
TATCCCTCGTACGGTACCTATTATTTATGGTGCTTACCTAGCATTGCTGTGCGGCGGCTCGCGCCTTGTTGTTAGAAACC
TTGTCGCAACAACCTCAAAAGATCCTCGGGAAGAGGTTTTGATTTACGGTGCTGGTTCCGGTGGTCGTCAACTTGCCGTT
GCTCTGCGAGCGTCAGAGAACTATCGAATTCGAGCGTTTATTGATGAGGATAAGACGCTTATAAACACGATGATTCTGGG
CTTACCAGTTATTGAATTAGATAAATCTGAGACTTTAATCAATAAGTATGCAACTTCAAAGATATTACTTGCTATTCCTA
GTGCCTCTCGTGCACGTCGTAAGCAAGTATTGGACTTATTAGCCCCCTTGCCTGTTGAGATTCAAACTGTGCCTGATATG
GCCGATATTGTCTCTGGTAAGGCTAAAATTGATGAATTAACAGACGTACCAATTGAAGACCTATTAGGACGTGATGCTGT
TACTCCCCAGCAAGTTTTGATGGAAGCGAACATCAAAGGAAAAGTTGTAATGGTGACTGGTGCTGGCGGTTCTATTGGCT
CAGAGTTGTGTCGTCAAATCCTAAAACAGCAGCCTAAAACCTTAGTGCTCTTTGAAGTCTCTGAGTTTGGCTTATATCAA
ATCGACCGCGAGCTATCTTTAATTTCCGAAAATGAAGGCTATGATATTGATATAGTGCCATTGCTAGGTTCAGTCCAACG
CCCCCATCGCTTATTGACTTCAATGAAGTCTTTTGGTGTTCAGACTGTTTATCATGCAGCTGCGTATAAGCATGTTCCTT
TAGTTGAGTATAATGTGGTTGAAGGTGTGCGTAATAATATTTATGGCACCTACTATACGGCTAACGCTGCAATTGAAGCG
GGAGTTGAATCTTTTGTACTTATTTCAACAGATAAAGCTGTACGCCCAACTAACGTGATGGGTACAACCAAGCGGATGGC
TGAGCTAGGCTTACAGGCATTGGCACAGCAAGAGAATCCAAAAGAGAGCGGAACTCGTTTTTGTATGGTGCGTTTTGGTA
ATGTGCTTGGTTCTTCAGGTTCAGTGATTCCGTTGTTTAAGAAACAGATTAAAGCCGGCGGCCCACTCACGGTCACTCAT
CCTGATATCACTCGCTTCTTTATGACTATTCCTGAGGCAGCGCAACTGGTTATTCAAGCCGGCGCTATGGGTAAAGGCGG
TGATGTGTTCGTACTTGATATGGGCGAATCAGTAAAAATTACAGATCTAGCGGAAAACCTCATTAGACTTTCAGGCCTAT
CAGTTAAGAATGAAGATAATCAACATGGTGATATTGAGATTAAATTTTCAGGTTTACGCCCTGGAGAGAAGTTGTATGAA
GAGTTATTGATTGGTGATAATGTCGCGCGTACAGCTCACGAACGAATTATGACCGCACAAGAGGTGTTCTTGCCGATAGA
TGAGTATGACACGCTACTTGAATCTTTAGACTTTGCTTGTCACAACCTAGAGCATGATACGATTCGACAATTGCTTCTTG
ATGCGCCGACTGGGTTTTCGCCAACGGATGGTGTTGGTGATTTGGTTTGGAATGCGAGTCAAATGCAAGAAGAGCTTATT
GAAAACCGCTAG

Upstream 100 bases:

>100_bases
TTGTAATCAATAATCCAAATTTGGAACCAAGCTAATTCCTATTCACCTGACCTAAAATCATCGAAATAGATTTTTAGCAA
AACTAAATAAGAATAACTCT

Downstream 100 bases:

>100_bases
ATAATAGAGAGCCTCGTAATGTGATTACGGGGCTCTTTTTGATCGTGTCGAATGCGTAGCGAGTACTTGATTTTCTAAGT
GCTTCGCATAGTCAGTTAAG

Product: putative capsular polysaccharide biosynthesis protein CapD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 643; Mature: 643

Protein sequence:

>643_residues
MQRLNFIWHLSRVHKRGISVIIDSFFIIFSLHAALWTRLGDVRFLNDSDNLLLIGLTVISTVLIFTKIGLYRAVLRYLTF
QALFVVTSGAILSALALAVFAYYLQEPIPRTVPIIYGAYLALLCGGSRLVVRNLVATTSKDPREEVLIYGAGSGGRQLAV
ALRASENYRIRAFIDEDKTLINTMILGLPVIELDKSETLINKYATSKILLAIPSASRARRKQVLDLLAPLPVEIQTVPDM
ADIVSGKAKIDELTDVPIEDLLGRDAVTPQQVLMEANIKGKVVMVTGAGGSIGSELCRQILKQQPKTLVLFEVSEFGLYQ
IDRELSLISENEGYDIDIVPLLGSVQRPHRLLTSMKSFGVQTVYHAAAYKHVPLVEYNVVEGVRNNIYGTYYTANAAIEA
GVESFVLISTDKAVRPTNVMGTTKRMAELGLQALAQQENPKESGTRFCMVRFGNVLGSSGSVIPLFKKQIKAGGPLTVTH
PDITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKITDLAENLIRLSGLSVKNEDNQHGDIEIKFSGLRPGEKLYE
ELLIGDNVARTAHERIMTAQEVFLPIDEYDTLLESLDFACHNLEHDTIRQLLLDAPTGFSPTDGVGDLVWNASQMQEELI
ENR

Sequences:

>Translated_643_residues
MQRLNFIWHLSRVHKRGISVIIDSFFIIFSLHAALWTRLGDVRFLNDSDNLLLIGLTVISTVLIFTKIGLYRAVLRYLTF
QALFVVTSGAILSALALAVFAYYLQEPIPRTVPIIYGAYLALLCGGSRLVVRNLVATTSKDPREEVLIYGAGSGGRQLAV
ALRASENYRIRAFIDEDKTLINTMILGLPVIELDKSETLINKYATSKILLAIPSASRARRKQVLDLLAPLPVEIQTVPDM
ADIVSGKAKIDELTDVPIEDLLGRDAVTPQQVLMEANIKGKVVMVTGAGGSIGSELCRQILKQQPKTLVLFEVSEFGLYQ
IDRELSLISENEGYDIDIVPLLGSVQRPHRLLTSMKSFGVQTVYHAAAYKHVPLVEYNVVEGVRNNIYGTYYTANAAIEA
GVESFVLISTDKAVRPTNVMGTTKRMAELGLQALAQQENPKESGTRFCMVRFGNVLGSSGSVIPLFKKQIKAGGPLTVTH
PDITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKITDLAENLIRLSGLSVKNEDNQHGDIEIKFSGLRPGEKLYE
ELLIGDNVARTAHERIMTAQEVFLPIDEYDTLLESLDFACHNLEHDTIRQLLLDAPTGFSPTDGVGDLVWNASQMQEELI
ENR
>Mature_643_residues
MQRLNFIWHLSRVHKRGISVIIDSFFIIFSLHAALWTRLGDVRFLNDSDNLLLIGLTVISTVLIFTKIGLYRAVLRYLTF
QALFVVTSGAILSALALAVFAYYLQEPIPRTVPIIYGAYLALLCGGSRLVVRNLVATTSKDPREEVLIYGAGSGGRQLAV
ALRASENYRIRAFIDEDKTLINTMILGLPVIELDKSETLINKYATSKILLAIPSASRARRKQVLDLLAPLPVEIQTVPDM
ADIVSGKAKIDELTDVPIEDLLGRDAVTPQQVLMEANIKGKVVMVTGAGGSIGSELCRQILKQQPKTLVLFEVSEFGLYQ
IDRELSLISENEGYDIDIVPLLGSVQRPHRLLTSMKSFGVQTVYHAAAYKHVPLVEYNVVEGVRNNIYGTYYTANAAIEA
GVESFVLISTDKAVRPTNVMGTTKRMAELGLQALAQQENPKESGTRFCMVRFGNVLGSSGSVIPLFKKQIKAGGPLTVTH
PDITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKITDLAENLIRLSGLSVKNEDNQHGDIEIKFSGLRPGEKLYE
ELLIGDNVARTAHERIMTAQEVFLPIDEYDTLLESLDFACHNLEHDTIRQLLLDAPTGFSPTDGVGDLVWNASQMQEELI
ENR

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

Organism=Homo sapiens, GI7657641, Length=276, Percent_Identity=24.6376811594203, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 70847; Mature: 70847

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLNFIWHLSRVHKRGISVIIDSFFIIFSLHAALWTRLGDVRFLNDSDNLLLIGLTVIS
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEHHHHH
TVLIFTKIGLYRAVLRYLTFQALFVVTSGAILSALALAVFAYYLQEPIPRTVPIIYGAYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ALLCGGSRLVVRNLVATTSKDPREEVLIYGAGSGGRQLAVALRASENYRIRAFIDEDKTL
HHHHCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEECCCHHH
INTMILGLPVIELDKSETLINKYATSKILLAIPSASRARRKQVLDLLAPLPVEIQTVPDM
HHHHHHHCCEEEECCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCH
ADIVSGKAKIDELTDVPIEDLLGRDAVTPQQVLMEANIKGKVVMVTGAGGSIGSELCRQI
HHHHCCCHHHHHHCCCCHHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
LKQQPKTLVLFEVSEFGLYQIDRELSLISENEGYDIDIVPLLGSVQRPHRLLTSMKSFGV
HHCCCCEEEEEEECCCCHHHCCCHHHEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCH
QTVYHAAAYKHVPLVEYNVVEGVRNNIYGTYYTANAAIEAGVESFVLISTDKAVRPTNVM
HHHHHHHHHCCCCCEEHHHHHHHHHCCCEEEEEECHHHHCCCCEEEEEECCCCCCCCCCC
GTTKRMAELGLQALAQQENPKESGTRFCMVRFGNVLGSSGSVIPLFKKQIKAGGPLTVTH
HHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEHHHHCCCCCEEHHHHHHHCCCCCEEEEC
PDITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKITDLAENLIRLSGLSVKNEDN
CHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCC
QHGDIEIKFSGLRPGEKLYEELLIGDNVARTAHERIMTAQEVFLPIDEYDTLLESLDFAC
CCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHH
HNLEHDTIRQLLLDAPTGFSPTDGVGDLVWNASQMQEELIENR
HCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MQRLNFIWHLSRVHKRGISVIIDSFFIIFSLHAALWTRLGDVRFLNDSDNLLLIGLTVIS
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEHHHHH
TVLIFTKIGLYRAVLRYLTFQALFVVTSGAILSALALAVFAYYLQEPIPRTVPIIYGAYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ALLCGGSRLVVRNLVATTSKDPREEVLIYGAGSGGRQLAVALRASENYRIRAFIDEDKTL
HHHHCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEECCCHHH
INTMILGLPVIELDKSETLINKYATSKILLAIPSASRARRKQVLDLLAPLPVEIQTVPDM
HHHHHHHCCEEEECCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCH
ADIVSGKAKIDELTDVPIEDLLGRDAVTPQQVLMEANIKGKVVMVTGAGGSIGSELCRQI
HHHHCCCHHHHHHCCCCHHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
LKQQPKTLVLFEVSEFGLYQIDRELSLISENEGYDIDIVPLLGSVQRPHRLLTSMKSFGV
HHCCCCEEEEEEECCCCHHHCCCHHHEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHCH
QTVYHAAAYKHVPLVEYNVVEGVRNNIYGTYYTANAAIEAGVESFVLISTDKAVRPTNVM
HHHHHHHHHCCCCCEEHHHHHHHHHCCCEEEEEECHHHHCCCCEEEEEECCCCCCCCCCC
GTTKRMAELGLQALAQQENPKESGTRFCMVRFGNVLGSSGSVIPLFKKQIKAGGPLTVTH
HHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEHHHHCCCCCEEHHHHHHHCCCCCEEEEC
PDITRFFMTIPEAAQLVIQAGAMGKGGDVFVLDMGESVKITDLAENLIRLSGLSVKNEDN
CHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHCCCCCCCCCC
QHGDIEIKFSGLRPGEKLYEELLIGDNVARTAHERIMTAQEVFLPIDEYDTLLESLDFAC
CCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHH
HNLEHDTIRQLLLDAPTGFSPTDGVGDLVWNASQMQEELIENR
HCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]