Click here to switch to the map view.

The map label for this gene is gfcB [H]

Identifier: 218708272

GI number: 218708272

Start: 201778

End: 202482

Strand: Direct

Name: gfcB [H]

Synonym: VS_0209

Alternate gene names: 218708272

Gene position: 201778-202482 (Clockwise)

Preceding gene: 218708271

Following gene: 218708273

Centisome position: 6.12

GC content: 42.7

Gene sequence:

>705_bases
ATGCTTAAACCTCTAATCATATCTCTTGGTCTTTTTCTTGCTGGTTGTTCTCAGCAGTTTCAAGACGTTAACTCTACTTT
TGATGAAGCCTTTTTGGGAAGCTCCGATGTTGAGCTATCAAAGGAATACATTCAAACGTTACCTTATTCCAGCATTTATG
CAGAAGTGAATGAGCAAGGTAAAATCTTCATGGTTTTGGCCTACGTAGGTGAAAACCCGCAAACGGGTGCAGAGCAGTTA
AAGTGGATGTCTTCTGACAAAGCGATGATCGTCACTGAAAATGGACGTATCGTACAAACTCTATTGCTTCCTTATGAGAA
CCTCTCTGGTTTGGCATTCCAACCGTTGGATGCATTCTCTTCTGCAAATAGCTCGTCAGCAGACTCTTCTTCTGCGTTTG
ATGTGTCAGCTAACCCCGGAGCCCAAAAGTGGCAAGCGGTTTACGACTGGCAACCCAACTATCGATTTGGCTACAAAGCG
AATATCACCCGAACGTATGCAGGGAATCAAACGGTAGAAACACCGTTAGCGTCTATCGATACCAAGAAGTTTCAAGAAAA
AATTTACTTCCCAATGTTAGAGCAAGATATGACCAACGAGTATTGGGTCGACAGCAAAGGCAAAGTGGTCAAAACCATAC
AGTATTTGGGCCCTGATATGACAAGGCTTGAGTTAACCGTCCTTAAGCATTATCAAAGCAATTAA

Upstream 100 bases:

>100_bases
ACCATTTTATGTGAAAGCATAAAGTGGTTTTTTTATATCTAATTGATTAATTTTCCATATTGGACAGCAGCAACCAGATT
GCTAGGAAGCAGAACTCGTC

Downstream 100 bases:

>100_bases
CGAACAGGGTAATGAACTAAAATGATGAATTATATTAGTCACGTATCAAAAATGACGGGACGTCGGTTGCCTGATGTGAG
ATCTACGTTAACGATGAGAG

Product: putative outer membrane lipoprotein

Products: NA

Alternate protein names: Group 4 capsule protein B homolog [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MLKPLIISLGLFLAGCSQQFQDVNSTFDEAFLGSSDVELSKEYIQTLPYSSIYAEVNEQGKIFMVLAYVGENPQTGAEQL
KWMSSDKAMIVTENGRIVQTLLLPYENLSGLAFQPLDAFSSANSSSADSSSAFDVSANPGAQKWQAVYDWQPNYRFGYKA
NITRTYAGNQTVETPLASIDTKKFQEKIYFPMLEQDMTNEYWVDSKGKVVKTIQYLGPDMTRLELTVLKHYQSN

Sequences:

>Translated_234_residues
MLKPLIISLGLFLAGCSQQFQDVNSTFDEAFLGSSDVELSKEYIQTLPYSSIYAEVNEQGKIFMVLAYVGENPQTGAEQL
KWMSSDKAMIVTENGRIVQTLLLPYENLSGLAFQPLDAFSSANSSSADSSSAFDVSANPGAQKWQAVYDWQPNYRFGYKA
NITRTYAGNQTVETPLASIDTKKFQEKIYFPMLEQDMTNEYWVDSKGKVVKTIQYLGPDMTRLELTVLKHYQSN
>Mature_234_residues
MLKPLIISLGLFLAGCSQQFQDVNSTFDEAFLGSSDVELSKEYIQTLPYSSIYAEVNEQGKIFMVLAYVGENPQTGAEQL
KWMSSDKAMIVTENGRIVQTLLLPYENLSGLAFQPLDAFSSANSSSADSSSAFDVSANPGAQKWQAVYDWQPNYRFGYKA
NITRTYAGNQTVETPLASIDTKKFQEKIYFPMLEQDMTNEYWVDSKGKVVKTIQYLGPDMTRLELTVLKHYQSN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjbF [H]

Homologues:

Organism=Escherichia coli, GI1787221, Length=232, Percent_Identity=31.8965517241379, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI87082360, Length=238, Percent_Identity=27.7310924369748, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021308 [H]

Pfam domain/function: PF11102 DUF2886 [H]

EC number: NA

Molecular weight: Translated: 26279; Mature: 26279

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKPLIISLGLFLAGCSQQFQDVNSTFDEAFLGSSDVELSKEYIQTLPYSSIYAEVNEQG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHCCCCC
KIFMVLAYVGENPQTGAEQLKWMSSDKAMIVTENGRIVQTLLLPYENLSGLAFQPLDAFS
CEEEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCCCEECCHHHHH
SANSSSADSSSAFDVSANPGAQKWQAVYDWQPNYRFGYKANITRTYAGNQTVETPLASID
CCCCCCCCCCCCEEECCCCCHHHCEEEEECCCCCCCCEEECEEEEECCCCCHHCCHHHHH
TKKFQEKIYFPMLEQDMTNEYWVDSKGKVVKTIQYLGPDMTRLELTVLKHYQSN
HHHHHHHHCCCHHHHCCCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKPLIISLGLFLAGCSQQFQDVNSTFDEAFLGSSDVELSKEYIQTLPYSSIYAEVNEQG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHCCCCC
KIFMVLAYVGENPQTGAEQLKWMSSDKAMIVTENGRIVQTLLLPYENLSGLAFQPLDAFS
CEEEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCCCCEECCHHHHH
SANSSSADSSSAFDVSANPGAQKWQAVYDWQPNYRFGYKANITRTYAGNQTVETPLASID
CCCCCCCCCCCCEEECCCCCHHHCEEEEECCCCCCCCEEECEEEEECCCCCHHCCHHHHH
TKKFQEKIYFPMLEQDMTNEYWVDSKGKVVKTIQYLGPDMTRLELTVLKHYQSN
HHHHHHHHCCCHHHHCCCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]