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The map label for this gene is rfaQ [H]

Identifier: 218708256

GI number: 218708256

Start: 188310

End: 189410

Strand: Direct

Name: rfaQ [H]

Synonym: VS_0193

Alternate gene names: 218708256

Gene position: 188310-189410 (Clockwise)

Preceding gene: 218708254

Following gene: 218708257

Centisome position: 5.71

GC content: 39.87

Gene sequence:

>1101_bases
ATGAACGATTCATGTAGTTACCAAAAAATATTAGTTGTTGCCACTCATTGCATTGGTGATAGTTTGTTGATCTCTGCTTT
TACCCATAGTCTGAGAAAAGCGTTTCCGACCGCAACAATAGATGTTTTAGTTAATGCTAGAGGGGAGATGGTTTTTGGTA
CCAATCCAGACGTTGACTCTTTAGTTGAAATTCCGCCAAGAGCATCCGTTAAGGACTATTACCGGATTTTAAAAACGCAT
GGTCGATATGATTTAGTCGTCAATGAAATGCTTAATGATAGAACCGCTATCTATAGTTTTATCTTTGGTAAGAAAAGACT
TGGTGCAATTGATGAATCGCTTTCTGGCGCCTGGGTTAAAAAGTTAATTTATACTCATTACATTAAAGAACAGCATCGCT
TTGAGCATAAAATGAGTCGCGTTGCTCGTATGCTGGATACCATAGATGTTAATTGTATTGCACGGCTTGTATCTCCCGAA
GAGTTATTACCTTCAGTGGTTCAAAAGAGATTGCCATCAAACTACATTGTTGTGCATGCGCCATCCTCCAACGAAATTAA
GCAGTGGCCAGTCTCGTATTGGGTTGAAGTCATCAATCGTCTGATATCTGCAGGTTATAATATTGTCTTATCTGGCGCTA
AATTAGAACGAGACGAGACCATTGTTGAACAAATCATTAGCCAAGTTCCTGAATCGAATCAACTGGTCAGTGTTTTGGGG
GAGTTATCATTAGCTCAAACCTCTGTATTAATAAAACACAGTGATGGTTTTGTTGGACCTGATAGTGGCCCGGGTCACCT
CGCATCAGGTTACTCTATCCCAATTGTATCTATTATTAGCGTAGCGCCAGCAAGCATGTGGTCACCTTGGCCATATGAAG
AGCCAATTGATGTAACGAACAATTTATACAGCAATGGTGTTAGCTCCCAAAGAGTCGCCAATATTAGACTTGTGCAATCT
GAACGTAACTGCGTCCCTTGTTATAAAAACAGATGTCAAATTAGCGATGATGTCTATTCGCCATGCCTTCAAGATATCAA
GCCAGATAACGTTGTTTCTGCTGTTCTAGAAATGATGCCATTGGAATCGATCAATGAATAA

Upstream 100 bases:

>100_bases
GTTTTATGGATTTGCTTTGTTGTAAACATGAATCACTGTCTCGTATTGGGGAGTTTATGGCATACTTGGTAGAACAGTAT
ATCAAACGCCGAACAGATTA

Downstream 100 bases:

>100_bases
CGCTCTTTCTGCTCCAAAATCTATTTGTATTCTGCGTTTATCTGCCATTGGTGACGTTTGTCATGCCCTTTCTGTGGTGC
AACTTATTCAAGCTACCTAT

Product: LPS core biosynthesis-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MNDSCSYQKILVVATHCIGDSLLISAFTHSLRKAFPTATIDVLVNARGEMVFGTNPDVDSLVEIPPRASVKDYYRILKTH
GRYDLVVNEMLNDRTAIYSFIFGKKRLGAIDESLSGAWVKKLIYTHYIKEQHRFEHKMSRVARMLDTIDVNCIARLVSPE
ELLPSVVQKRLPSNYIVVHAPSSNEIKQWPVSYWVEVINRLISAGYNIVLSGAKLERDETIVEQIISQVPESNQLVSVLG
ELSLAQTSVLIKHSDGFVGPDSGPGHLASGYSIPIVSIISVAPASMWSPWPYEEPIDVTNNLYSNGVSSQRVANIRLVQS
ERNCVPCYKNRCQISDDVYSPCLQDIKPDNVVSAVLEMMPLESINE

Sequences:

>Translated_366_residues
MNDSCSYQKILVVATHCIGDSLLISAFTHSLRKAFPTATIDVLVNARGEMVFGTNPDVDSLVEIPPRASVKDYYRILKTH
GRYDLVVNEMLNDRTAIYSFIFGKKRLGAIDESLSGAWVKKLIYTHYIKEQHRFEHKMSRVARMLDTIDVNCIARLVSPE
ELLPSVVQKRLPSNYIVVHAPSSNEIKQWPVSYWVEVINRLISAGYNIVLSGAKLERDETIVEQIISQVPESNQLVSVLG
ELSLAQTSVLIKHSDGFVGPDSGPGHLASGYSIPIVSIISVAPASMWSPWPYEEPIDVTNNLYSNGVSSQRVANIRLVQS
ERNCVPCYKNRCQISDDVYSPCLQDIKPDNVVSAVLEMMPLESINE
>Mature_366_residues
MNDSCSYQKILVVATHCIGDSLLISAFTHSLRKAFPTATIDVLVNARGEMVFGTNPDVDSLVEIPPRASVKDYYRILKTH
GRYDLVVNEMLNDRTAIYSFIFGKKRLGAIDESLSGAWVKKLIYTHYIKEQHRFEHKMSRVARMLDTIDVNCIARLVSPE
ELLPSVVQKRLPSNYIVVHAPSSNEIKQWPVSYWVEVINRLISAGYNIVLSGAKLERDETIVEQIISQVPESNQLVSVLG
ELSLAQTSVLIKHSDGFVGPDSGPGHLASGYSIPIVSIISVAPASMWSPWPYEEPIDVTNNLYSNGVSSQRVANIRLVQS
ERNCVPCYKNRCQISDDVYSPCLQDIKPDNVVSAVLEMMPLESINE

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=287, Percent_Identity=23.3449477351916, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40851; Mature: 40851

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDSCSYQKILVVATHCIGDSLLISAFTHSLRKAFPTATIDVLVNARGEMVFGTNPDVDS
CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCHHH
LVEIPPRASVKDYYRILKTHGRYDLVVNEMLNDRTAIYSFIFGKKRLGAIDESLSGAWVK
HHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLIYTHYIKEQHRFEHKMSRVARMLDTIDVNCIARLVSPEELLPSVVQKRLPSNYIVVHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEC
PSSNEIKQWPVSYWVEVINRLISAGYNIVLSGAKLERDETIVEQIISQVPESNQLVSVLG
CCCCCHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHH
ELSLAQTSVLIKHSDGFVGPDSGPGHLASGYSIPIVSIISVAPASMWSPWPYEEPIDVTN
HHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCCCCCHHH
NLYSNGVSSQRVANIRLVQSERNCVPCYKNRCQISDDVYSPCLQDIKPDNVVSAVLEMMP
HHHHCCCCCHHHHEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHC
LESINE
HHHCCC
>Mature Secondary Structure
MNDSCSYQKILVVATHCIGDSLLISAFTHSLRKAFPTATIDVLVNARGEMVFGTNPDVDS
CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCHHH
LVEIPPRASVKDYYRILKTHGRYDLVVNEMLNDRTAIYSFIFGKKRLGAIDESLSGAWVK
HHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLIYTHYIKEQHRFEHKMSRVARMLDTIDVNCIARLVSPEELLPSVVQKRLPSNYIVVHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEC
PSSNEIKQWPVSYWVEVINRLISAGYNIVLSGAKLERDETIVEQIISQVPESNQLVSVLG
CCCCCHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHH
ELSLAQTSVLIKHSDGFVGPDSGPGHLASGYSIPIVSIISVAPASMWSPWPYEEPIDVTN
HHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCCCCCHHH
NLYSNGVSSQRVANIRLVQSERNCVPCYKNRCQISDDVYSPCLQDIKPDNVVSAVLEMMP
HHHHCCCCCHHHHEEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHC
LESINE
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA