Click here to switch to the map view.

The map label for this gene is opsX [H]

Identifier: 218708257

GI number: 218708257

Start: 189403

End: 190467

Strand: Direct

Name: opsX [H]

Synonym: VS_0194

Alternate gene names: 218708257

Gene position: 189403-190467 (Clockwise)

Preceding gene: 218708256

Following gene: 218708258

Centisome position: 5.74

GC content: 43.94

Gene sequence:

>1065_bases
ATGAATAACGCTCTTTCTGCTCCAAAATCTATTTGTATTCTGCGTTTATCTGCCATTGGTGACGTTTGTCATGCCCTTTC
TGTGGTGCAACTTATTCAAGCTACCTATCCAGAATGTCAGATCACGTGGGTGATGGGAAAAATCGAAGCTCAATTACTTG
GTGATATACCTGGAATTCAAGTTGTAGTGTTTGATAAAAAACACGGCCTAAAAGGAATGAAAGAAGTATGGAGAGCCCTG
CGTTCAACTCGGTTTGATTATTTGCTGCATATGCAAGTTGCATTAAGAGCCAGCCTGTTAACGATCGGAGTAAAGGCAAA
AGTAAAACTTGGTTTTAGTTGGACACGTGCCAAAGAGGGGCAGTGGCTCTTTACCAATCGCAAGCTACCAAAAACGGACG
CATCTCATGTGTTAGATAATTTCTCTGAATTTGCTTACTTTTTGGGATGTCCCAAACAGGTGCCGACATGGGATCTTACT
TTGTCTGATGAAGATCAAAGACTATCGATGGAGCTTGCGCATGAGCCGTATATTGTTATTAGCCCTGCCGCGAGTAAAGA
TGAGAGAAACTGGTTAGTTGAGCGCTATGCCGCTGTCGCCGATCACGCTTATCAGTTAGGCTTTAAAGTGGTTTTTTGTG
GTGCTCCAACGGATAGAGAGCGCAATTTAACTGACAATATATCTCAGCACATGACATCACCTTGTATTAACTTAGTAGGC
TCAACCTCGTTAAAGCAGCTTACCGCAGTGATTGGTCAATCCAGTGTAGTGATCGCTCCTGATTCAGGGCCTGCACACAT
CGCGACGACTCAAGGTGTCCCCGTGATTGGTTTGTATGCGCACAGTAACCCAATGCGAACAGGGCCTTACCATAGTTTAG
ACAGTGTGGTTTCTGTCTATGAACAGATTGCTGAAGAGCAACACGGTAAAGCGGTTGACGAGCTTCCATGGGGAACCCGA
GTAAAAGGAAAAGATCTTATGGCTCTTATTTCTACAGAATCGGTGATTGAGCAGCTAGACCGTGTATTAGGCCGATTGAA
AAACAAGAAAACATCCAGTGAATAA

Upstream 100 bases:

>100_bases
TGTCAAATTAGCGATGATGTCTATTCGCCATGCCTTCAAGATATCAAGCCAGATAACGTTGTTTCTGCTGTTCTAGAAAT
GATGCCATTGGAATCGATCA

Downstream 100 bases:

>100_bases
AGGAATGTCATGAAAATAGCAATATACCCAGGTACTTTTGATCCAGTGACTAACGGCCATTATGACTTAATTAAACGTGC
CGCATGTATGTTTGAAAAAC

Product: putative glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MNNALSAPKSICILRLSAIGDVCHALSVVQLIQATYPECQITWVMGKIEAQLLGDIPGIQVVVFDKKHGLKGMKEVWRAL
RSTRFDYLLHMQVALRASLLTIGVKAKVKLGFSWTRAKEGQWLFTNRKLPKTDASHVLDNFSEFAYFLGCPKQVPTWDLT
LSDEDQRLSMELAHEPYIVISPAASKDERNWLVERYAAVADHAYQLGFKVVFCGAPTDRERNLTDNISQHMTSPCINLVG
STSLKQLTAVIGQSSVVIAPDSGPAHIATTQGVPVIGLYAHSNPMRTGPYHSLDSVVSVYEQIAEEQHGKAVDELPWGTR
VKGKDLMALISTESVIEQLDRVLGRLKNKKTSSE

Sequences:

>Translated_354_residues
MNNALSAPKSICILRLSAIGDVCHALSVVQLIQATYPECQITWVMGKIEAQLLGDIPGIQVVVFDKKHGLKGMKEVWRAL
RSTRFDYLLHMQVALRASLLTIGVKAKVKLGFSWTRAKEGQWLFTNRKLPKTDASHVLDNFSEFAYFLGCPKQVPTWDLT
LSDEDQRLSMELAHEPYIVISPAASKDERNWLVERYAAVADHAYQLGFKVVFCGAPTDRERNLTDNISQHMTSPCINLVG
STSLKQLTAVIGQSSVVIAPDSGPAHIATTQGVPVIGLYAHSNPMRTGPYHSLDSVVSVYEQIAEEQHGKAVDELPWGTR
VKGKDLMALISTESVIEQLDRVLGRLKNKKTSSE
>Mature_354_residues
MNNALSAPKSICILRLSAIGDVCHALSVVQLIQATYPECQITWVMGKIEAQLLGDIPGIQVVVFDKKHGLKGMKEVWRAL
RSTRFDYLLHMQVALRASLLTIGVKAKVKLGFSWTRAKEGQWLFTNRKLPKTDASHVLDNFSEFAYFLGCPKQVPTWDLT
LSDEDQRLSMELAHEPYIVISPAASKDERNWLVERYAAVADHAYQLGFKVVFCGAPTDRERNLTDNISQHMTSPCINLVG
STSLKQLTAVIGQSSVVIAPDSGPAHIATTQGVPVIGLYAHSNPMRTGPYHSLDSVVSVYEQIAEEQHGKAVDELPWGTR
VKGKDLMALISTESVIEQLDRVLGRLKNKKTSSE

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=288, Percent_Identity=23.6111111111111, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790051, Length=299, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1790050, Length=351, Percent_Identity=22.2222222222222, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 39180; Mature: 39180

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNALSAPKSICILRLSAIGDVCHALSVVQLIQATYPECQITWVMGKIEAQLLGDIPGIQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHCCCCCEE
VVVFDKKHGLKGMKEVWRALRSTRFDYLLHMQVALRASLLTIGVKAKVKLGFSWTRAKEG
EEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHEEEEEEEEEECEEEEECCCC
QWLFTNRKLPKTDASHVLDNFSEFAYFLGCPKQVPTWDLTLSDEDQRLSMELAHEPYIVI
CEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHEECCCCEEEE
SPAASKDERNWLVERYAAVADHAYQLGFKVVFCGAPTDRERNLTDNISQHMTSPCINLVG
ECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC
STSLKQLTAVIGQSSVVIAPDSGPAHIATTQGVPVIGLYAHSNPMRTGPYHSLDSVVSVY
CHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
EQIAEEQHGKAVDELPWGTRVKGKDLMALISTESVIEQLDRVLGRLKNKKTSSE
HHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNNALSAPKSICILRLSAIGDVCHALSVVQLIQATYPECQITWVMGKIEAQLLGDIPGIQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHCCCCCEE
VVVFDKKHGLKGMKEVWRALRSTRFDYLLHMQVALRASLLTIGVKAKVKLGFSWTRAKEG
EEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHEEEEEEEEEECEEEEECCCC
QWLFTNRKLPKTDASHVLDNFSEFAYFLGCPKQVPTWDLTLSDEDQRLSMELAHEPYIVI
CEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHEECCCCEEEE
SPAASKDERNWLVERYAAVADHAYQLGFKVVFCGAPTDRERNLTDNISQHMTSPCINLVG
ECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC
STSLKQLTAVIGQSSVVIAPDSGPAHIATTQGVPVIGLYAHSNPMRTGPYHSLDSVVSVY
CHHHHHHHHHHCCCCEEEECCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
EQIAEEQHGKAVDELPWGTRVKGKDLMALISTESVIEQLDRVLGRLKNKKTSSE
HHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]