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The map label for this gene is rmuC [H]

Identifier: 218708163

GI number: 218708163

Start: 89046

End: 90578

Strand: Direct

Name: rmuC [H]

Synonym: VS_0097

Alternate gene names: 218708163

Gene position: 89046-90578 (Clockwise)

Preceding gene: 218708161

Following gene: 218708164

Centisome position: 2.7

GC content: 47.36

Gene sequence:

>1533_bases
ATGCAATGGATTATCGAACATCAAGCACCGCTTATTGCTGCTATTTCCGGCGCGCTCGTCAGCGGCGGTGTGGTGGGTTG
GTGGATCAAACAGAAGTTCTCTTTTCAGCAGCGACTTCTTGAACAGCAACTAGAGTCCGACCGTTTGCTGTATGAGTCAC
AACAATCTCAGCTCAAATCCTCACTCGCAGAGGCGCAACAAGAGCTCAATGAGCTGGATGATGATCGAGATAAAGCGGCA
TTTGAACTTAAGCAGGCCCATGGCAAGGTGATGGCTGCGATGGAGAAGCTGCGCTATTTTGAAGCCGTGAAGCAAGAGCG
TCAGCAGTATGCCGATGATATCAATATTCTTAAAGAGCATAAGTCTGAATTAGAAGCCGAACTTCGTGAGCAAGAAGCAA
GGCATGACCAAGAAAACCTCGCCAACAGTGAAAAGCTGCAATTGTTAGAGCAGGCAGAGTCCCGACTTAAGCAGCAGTTT
GAACTGTTAGCGAATCAACTGTTTGAGAGCAAAACCGCTAAGGTCGATCAACAAAACAAGCAAAGCTTAGAGGGTTTGTT
GTCGCCGCTGAAAGAGCAACTAGAAGGCTTCAAGAAACAAGTGAACGACAGCTTTAGCCAAGAAGCCAAAGAGCGTCACA
CCTTAGTACATGAGCTTAAAAACCTGCAACGTCTTAATGAGAGCATGACTCGTGAAGCGGTTAATCTGACCCAAGCACTA
AAGGGCGATAATAAACAGCAGGGTAACTGGGGCGAAGTGGTACTGGCACGGGTGCTGGCAGAATCAGGGCTGCGCGAAGG
TCATGAATACCAAACTCAAGTGAACCTGCAAAACGATGCGGGCAAGCGTTACCAGCCAGATGTGATTGTGCATCTGCCAC
AAGACAAGCAAGTGGTGGTGGATTCAAAAATGGCTTTGGTGGCGTTTGAGCGTTACTTCAATGCTGAAACTGATCAACAA
CGTGATGCTGCATTACGTGATCACTTGGCTTCATTGCGCGCGCACATTAAAGGCTTGAGCCAGAAGGATTATCATCAACT
CAAAGGCATACAGAGCCTTGATTATGTGTTGATGTTTATTCCGGTAGAACCTGCGTTTCAGGTGGCGATTCAAGCCGACC
CTAGCTTGGTTAAAGATGCGATGGAGCAAAACATTATCTTGGTTAGCCCAACCACCTTGCTGGTGGCACTGCGTACCATT
GATAACTTGTGGCGCAACGAAAGACAGAACCAGAATGCACAAATCATTGCAGAGCGGGCGAGCAAACTTTACGACAAGCT
GCGCTTGTTTGTGGATGATATGGAAGGTCTTGGCAGTTCACTTGATAGAGCTAACCAAAGCTACCAAGGTGCCATGAATA
AGCTGGTGACTGGTCGTGGTAACGTGATTCGTCAGGCCGAAAGCTTTAAGCAATTGGGTGTTGAGGTGAAGAAACCTATC
TCGGTTGGCTTGGCGGAAATCGCTCAAAATGAGGCTTTTTCAGAAAATGCCTCCTTAGTAGAAAGACAACCCGCTGAGGA
TAAAGTAAACTAA

Upstream 100 bases:

>100_bases
GCTTAGTCTATCTGTCGAATTTTAATACGGCAAACTGGACATTTATCCAGTATCAAAATACCCTTTAATGAGTTATTTCC
AATTAGGCTAAATCATTATC

Downstream 100 bases:

>100_bases
TCGGCCGCAGCGCCTCTAAAGAGAGAGTGTACTGTCGATGAGAACTTACCATGGTAGATAACAGCATTATGGACACAAGC
GTGCAGACAAATTCAGCAGT

Product: DNA recombination protein rmuC homolog

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MQWIIEHQAPLIAAISGALVSGGVVGWWIKQKFSFQQRLLEQQLESDRLLYESQQSQLKSSLAEAQQELNELDDDRDKAA
FELKQAHGKVMAAMEKLRYFEAVKQERQQYADDINILKEHKSELEAELREQEARHDQENLANSEKLQLLEQAESRLKQQF
ELLANQLFESKTAKVDQQNKQSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQAL
KGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVNLQNDAGKRYQPDVIVHLPQDKQVVVDSKMALVAFERYFNAETDQQ
RDAALRDHLASLRAHIKGLSQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVKDAMEQNIILVSPTTLLVALRTI
DNLWRNERQNQNAQIIAERASKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLVTGRGNVIRQAESFKQLGVEVKKPI
SVGLAEIAQNEAFSENASLVERQPAEDKVN

Sequences:

>Translated_510_residues
MQWIIEHQAPLIAAISGALVSGGVVGWWIKQKFSFQQRLLEQQLESDRLLYESQQSQLKSSLAEAQQELNELDDDRDKAA
FELKQAHGKVMAAMEKLRYFEAVKQERQQYADDINILKEHKSELEAELREQEARHDQENLANSEKLQLLEQAESRLKQQF
ELLANQLFESKTAKVDQQNKQSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQAL
KGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVNLQNDAGKRYQPDVIVHLPQDKQVVVDSKMALVAFERYFNAETDQQ
RDAALRDHLASLRAHIKGLSQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVKDAMEQNIILVSPTTLLVALRTI
DNLWRNERQNQNAQIIAERASKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLVTGRGNVIRQAESFKQLGVEVKKPI
SVGLAEIAQNEAFSENASLVERQPAEDKVN
>Mature_510_residues
MQWIIEHQAPLIAAISGALVSGGVVGWWIKQKFSFQQRLLEQQLESDRLLYESQQSQLKSSLAEAQQELNELDDDRDKAA
FELKQAHGKVMAAMEKLRYFEAVKQERQQYADDINILKEHKSELEAELREQEARHDQENLANSEKLQLLEQAESRLKQQF
ELLANQLFESKTAKVDQQNKQSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQAL
KGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVNLQNDAGKRYQPDVIVHLPQDKQVVVDSKMALVAFERYFNAETDQQ
RDAALRDHLASLRAHIKGLSQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVKDAMEQNIILVSPTTLLVALRTI
DNLWRNERQNQNAQIIAERASKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLVTGRGNVIRQAESFKQLGVEVKKPI
SVGLAEIAQNEAFSENASLVERQPAEDKVN

Specific function: Involved in DNA recombination [H]

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family [H]

Homologues:

Organism=Escherichia coli, GI1790266, Length=408, Percent_Identity=56.6176470588235, Blast_Score=473, Evalue=1e-134,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003798 [H]

Pfam domain/function: PF02646 RmuC [H]

EC number: NA

Molecular weight: Translated: 58100; Mature: 58100

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWIIEHQAPLIAAISGALVSGGVVGWWIKQKFSFQQRLLEQQLESDRLLYESQQSQLKS
CCCCHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLAEAQQELNELDDDRDKAAFELKQAHGKVMAAMEKLRYFEAVKQERQQYADDINILKEH
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSELEAELREQEARHDQENLANSEKLQLLEQAESRLKQQFELLANQLFESKTAKVDQQNK
HHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
QSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVNLQNDAGKRYQPDVIVHLPQDKQVVV
CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCCCCCEEEECCCCCEEEH
DSKMALVAFERYFNAETDQQRDAALRDHLASLRAHIKGLSQKDYHQLKGIQSLDYVLMFI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCEEEEE
PVEPAFQVAIQADPSLVKDAMEQNIILVSPTTLLVALRTIDNLWRNERQNQNAQIIAERA
ECCHHHHEEECCCHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLVTGRGNVIRQAESFKQLGVEVKKPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHCHH
SVGLAEIAQNEAFSENASLVERQPAEDKVN
HHHHHHHHHHHHHCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MQWIIEHQAPLIAAISGALVSGGVVGWWIKQKFSFQQRLLEQQLESDRLLYESQQSQLKS
CCCCHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLAEAQQELNELDDDRDKAAFELKQAHGKVMAAMEKLRYFEAVKQERQQYADDINILKEH
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSELEAELREQEARHDQENLANSEKLQLLEQAESRLKQQFELLANQLFESKTAKVDQQNK
HHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
QSLEGLLSPLKEQLEGFKKQVNDSFSQEAKERHTLVHELKNLQRLNESMTREAVNLTQAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVNLQNDAGKRYQPDVIVHLPQDKQVVV
CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCCCCCEEEECCCCCEEEH
DSKMALVAFERYFNAETDQQRDAALRDHLASLRAHIKGLSQKDYHQLKGIQSLDYVLMFI
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCEEEEE
PVEPAFQVAIQADPSLVKDAMEQNIILVSPTTLLVALRTIDNLWRNERQNQNAQIIAERA
ECCHHHHEEECCCHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SKLYDKLRLFVDDMEGLGSSLDRANQSYQGAMNKLVTGRGNVIRQAESFKQLGVEVKKPI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHCHH
SVGLAEIAQNEAFSENASLVERQPAEDKVN
HHHHHHHHHHHHHCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]