| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708162
Identifier: 218708162
GI number: 218708162
Start: 88014
End: 88907
Strand: Reverse
Name: 218708162
Synonym: VS_0096
Alternate gene names: NA
Gene position: 88907-88014 (Counterclockwise)
Preceding gene: 218708170
Following gene: 218708159
Centisome position: 2.69
GC content: 47.43
Gene sequence:
>894_bases ATGAACGAACGTCGTGCCTTGGGCTTTGGCCTTGCTGCGGTATTACTGTGGTCAACAGTCGCTACTGCTTTTAAGCTGAC CCTTGCTGAGTTTTCACCGATTCAAATGCTGACCATCGCCAGCATTGTGTCGTCGATTGCGCTGATCGCAGTCTGCGCGT TTCAAGGCAAGCTTTCTCAGCTGAGTACCACGTTTCTTTCAAACCCTTGGTATTACTTACTGCTCGGTTTGGTTAACCCA CTGGCCTATTACCTGATTCTATTCAAAGCCTACGACCTGCTGCCTGCATCTCAAGCTCAAGCCATCAACTACAGTTGGGC GATCACGCTAACCTTAATGGCTGCGGTTTTTCTGGGGCAAAAGATTCGTAAACAAGATTGGATTGCGTGTACCTTCAGCT ATGCGGGTGTGGTAGTCATTGCCACCAAAGGTGATGTATTAGGCATGCAGTTCGATAGCCCACTCGGTGTGGCACTGGCG CTGCTTTCAACCTTGCTTTGGGCGGGCTACTGGATTCTCAATACCAAAAATAAAGCTGACCCTGTGGTGGGTGTACTGCT TGGGTTCTTAGTGGCACTGCCATTCGCAATTGGCTTAACCATTTACGAGGGCGAGAGTTTTATCCAAATCACAGCAAAAG GTTGGATGGCCGTGACTTATGTTGGCCTGTTCGAGATGGGCATTACCTTTGTCTTGTGGCTATCAGCACTAAAACTAACC AACAATACGGCACGTATCAGCAACCTAATTTTTGCCTCACCGTTTATCTCGCTAATGCTACTTTCAACCATCATTGGCGA AGAGATTCACCCAGCGACACTGTTTGGCTTACTGCTAATCATTGCTGGTTTGGTGATTCAACAGATCAAGTTTTCAAAGA AAAACCCTACGTAA
Upstream 100 bases:
>100_bases GGTATTTTGATACTGGATAAATGTCCAGTTTGCCGTATTAAAATTCGACAGATAGACTAAGCGCTCCGTATTCTGCCCCA TCAAATTAGAATGAGTTGCT
Downstream 100 bases:
>100_bases ATAAGAGCTAAAAGGCTCGATTGAGCACGAAAAGCTATCGATATAGTCGAATTCTCTCAATTAGATGTTAGATACAAAAA TGGCGAGTCATATGACTCGC
Product: drug/metabolite transporter superfamily permease
Products: NA
Alternate protein names: Integral Membrane Domain-Containing Protein; Transporter Drug/Metabolite Exporter Family; DMT Family Permease; Drug/Metabolite Exporter Family Protein; DMT Superfamily Permease; Drug/Metabolite Transporter Superfamily Permease; Drug/Metabolite Transporter Permease; Permease DMT Superfamily; Permease Outative
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MNERRALGFGLAAVLLWSTVATAFKLTLAEFSPIQMLTIASIVSSIALIAVCAFQGKLSQLSTTFLSNPWYYLLLGLVNP LAYYLILFKAYDLLPASQAQAINYSWAITLTLMAAVFLGQKIRKQDWIACTFSYAGVVVIATKGDVLGMQFDSPLGVALA LLSTLLWAGYWILNTKNKADPVVGVLLGFLVALPFAIGLTIYEGESFIQITAKGWMAVTYVGLFEMGITFVLWLSALKLT NNTARISNLIFASPFISLMLLSTIIGEEIHPATLFGLLLIIAGLVIQQIKFSKKNPT
Sequences:
>Translated_297_residues MNERRALGFGLAAVLLWSTVATAFKLTLAEFSPIQMLTIASIVSSIALIAVCAFQGKLSQLSTTFLSNPWYYLLLGLVNP LAYYLILFKAYDLLPASQAQAINYSWAITLTLMAAVFLGQKIRKQDWIACTFSYAGVVVIATKGDVLGMQFDSPLGVALA LLSTLLWAGYWILNTKNKADPVVGVLLGFLVALPFAIGLTIYEGESFIQITAKGWMAVTYVGLFEMGITFVLWLSALKLT NNTARISNLIFASPFISLMLLSTIIGEEIHPATLFGLLLIIAGLVIQQIKFSKKNPT >Mature_297_residues MNERRALGFGLAAVLLWSTVATAFKLTLAEFSPIQMLTIASIVSSIALIAVCAFQGKLSQLSTTFLSNPWYYLLLGLVNP LAYYLILFKAYDLLPASQAQAINYSWAITLTLMAAVFLGQKIRKQDWIACTFSYAGVVVIATKGDVLGMQFDSPLGVALA LLSTLLWAGYWILNTKNKADPVVGVLLGFLVALPFAIGLTIYEGESFIQITAKGWMAVTYVGLFEMGITFVLWLSALKLT NNTARISNLIFASPFISLMLLSTIIGEEIHPATLFGLLLIIAGLVIQQIKFSKKNPT
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32362; Mature: 32362
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNERRALGFGLAAVLLWSTVATAFKLTLAEFSPIQMLTIASIVSSIALIAVCAFQGKLSQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LSTTFLSNPWYYLLLGLVNPLAYYLILFKAYDLLPASQAQAINYSWAITLTLMAAVFLGQ HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHH KIRKQDWIACTFSYAGVVVIATKGDVLGMQFDSPLGVALALLSTLLWAGYWILNTKNKAD HHCCCCCEEEEEECCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCEEEEECCCCCC PVVGVLLGFLVALPFAIGLTIYEGESFIQITAKGWMAVTYVGLFEMGITFVLWLSALKLT HHHHHHHHHHHHHHHHHCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC NNTARISNLIFASPFISLMLLSTIIGEEIHPATLFGLLLIIAGLVIQQIKFSKKNPT CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNERRALGFGLAAVLLWSTVATAFKLTLAEFSPIQMLTIASIVSSIALIAVCAFQGKLSQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LSTTFLSNPWYYLLLGLVNPLAYYLILFKAYDLLPASQAQAINYSWAITLTLMAAVFLGQ HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHH KIRKQDWIACTFSYAGVVVIATKGDVLGMQFDSPLGVALALLSTLLWAGYWILNTKNKAD HHCCCCCEEEEEECCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCEEEEECCCCCC PVVGVLLGFLVALPFAIGLTIYEGESFIQITAKGWMAVTYVGLFEMGITFVLWLSALKLT HHHHHHHHHHHHHHHHHCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC NNTARISNLIFASPFISLMLLSTIIGEEIHPATLFGLLLIIAGLVIQQIKFSKKNPT CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA