Click here to switch to the map view.

The map label for this gene is uidR [C]

Identifier: 218708137

GI number: 218708137

Start: 57430

End: 58047

Strand: Reverse

Name: uidR [C]

Synonym: VS_0065

Alternate gene names: 218708137

Gene position: 58047-57430 (Counterclockwise)

Preceding gene: 218708139

Following gene: 218708136

Centisome position: 1.76

GC content: 39.16

Gene sequence:

>618_bases
ATGAACGTTCATTCATTAGTGAGTATATTATCACTGTCTGGTTTTTATTCTATGATAGATAAAAGACAACAAATTATAGA
TGCCGCCGAAAAACTGATTGCTGAATCAGGCTTTCACGGACTTTCTATGCATAAACTAGCTAAAGAAGCAGGAGTTGCGG
CTGGAACTATTTATCGCTACTTCTCAGACAAAGAAGAACTATTACAACAAGTTCGCTTAGCTGTCACTCAACGAAATGCT
GGTTTAATTCAGCAAGGCGTTGAAGATTCGATGAGTCTAAAAGAACGATTTAGAAAAATGTGGCTCAACATTTTCGAGCT
CTCGGGATCAAACATCTGCAATTTAAAGAATAGAGCTCAATACGACTCTTTACCTTGTATTCGCAGCCATGAGACCAAAG
AGATTGAACGAAAAATGTTCCACAAAATAGATCAACTCTTTACTGAAGGTAGAGAGCAAGGGGTGTTTAAGCCCCTAGAA
AACCCTGTTTTAGCAGCACTTAGCTTAGAAGTCAGTGTCACGCTGGCCCGTAAGCAATCTCTTGGATATTACCAACTTGA
TAAAAAAGCCATTGAAGCGGCGATTGAAGCAAGTTGGGATGCGATTATTACACACTAA

Upstream 100 bases:

>100_bases
ATGCTGCAACACCTCGAATGCTACGCTCTCTTATGCAAGAATTTTATATCACATATGAAAAACTATGTTGCACTTATGTA
TGGGTCTTAGGCTATAATGA

Downstream 100 bases:

>100_bases
TTTGGAGTTCTAACTAGAATGAAAAAGTGGACTTTCTTCATGTTACTCATCGCTGTACTACTTTTCGGCAGCGTTATTGG
GTTTAACATGTTTAAACAAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MNVHSLVSILSLSGFYSMIDKRQQIIDAAEKLIAESGFHGLSMHKLAKEAGVAAGTIYRYFSDKEELLQQVRLAVTQRNA
GLIQQGVEDSMSLKERFRKMWLNIFELSGSNICNLKNRAQYDSLPCIRSHETKEIERKMFHKIDQLFTEGREQGVFKPLE
NPVLAALSLEVSVTLARKQSLGYYQLDKKAIEAAIEASWDAIITH

Sequences:

>Translated_205_residues
MNVHSLVSILSLSGFYSMIDKRQQIIDAAEKLIAESGFHGLSMHKLAKEAGVAAGTIYRYFSDKEELLQQVRLAVTQRNA
GLIQQGVEDSMSLKERFRKMWLNIFELSGSNICNLKNRAQYDSLPCIRSHETKEIERKMFHKIDQLFTEGREQGVFKPLE
NPVLAALSLEVSVTLARKQSLGYYQLDKKAIEAAIEASWDAIITH
>Mature_205_residues
MNVHSLVSILSLSGFYSMIDKRQQIIDAAEKLIAESGFHGLSMHKLAKEAGVAAGTIYRYFSDKEELLQQVRLAVTQRNA
GLIQQGVEDSMSLKERFRKMWLNIFELSGSNICNLKNRAQYDSLPCIRSHETKEIERKMFHKIDQLFTEGREQGVFKPLE
NPVLAALSLEVSVTLARKQSLGYYQLDKKAIEAAIEASWDAIITH

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23233; Mature: 23233

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVHSLVSILSLSGFYSMIDKRQQIIDAAEKLIAESGFHGLSMHKLAKEAGVAAGTIYRY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHH
FSDKEELLQQVRLAVTQRNAGLIQQGVEDSMSLKERFRKMWLNIFELSGSNICNLKNRAQ
HCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
YDSLPCIRSHETKEIERKMFHKIDQLFTEGREQGVFKPLENPVLAALSLEVSVTLARKQS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
LGYYQLDKKAIEAAIEASWDAIITH
CCHHHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure
MNVHSLVSILSLSGFYSMIDKRQQIIDAAEKLIAESGFHGLSMHKLAKEAGVAAGTIYRY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHH
FSDKEELLQQVRLAVTQRNAGLIQQGVEDSMSLKERFRKMWLNIFELSGSNICNLKNRAQ
HCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
YDSLPCIRSHETKEIERKMFHKIDQLFTEGREQGVFKPLENPVLAALSLEVSVTLARKQS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC
LGYYQLDKKAIEAAIEASWDAIITH
CCHHHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]