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The map label for this gene is syrM2 [H]

Identifier: 218708125

GI number: 218708125

Start: 35233

End: 36174

Strand: Direct

Name: syrM2 [H]

Synonym: VS_0038

Alternate gene names: 218708125

Gene position: 35233-36174 (Clockwise)

Preceding gene: 218708123

Following gene: 218708129

Centisome position: 1.07

GC content: 46.6

Gene sequence:

>942_bases
GTGGAATTAGAAGACATCTATCGTAGAGACCTGAATTTACTGGTCGCCTTAAAGGTATTGATTGAAGAGGGCAGCGTAAG
CCAGGCCGCGCTTCGTCTTAACTTAAGCCAGTCGGCAACCAGTCGAGTACTAGGGCGTTTAAGAGAATTACTCAACGATC
CGCTGTTTACACGCCAAGGTCAGCACCTTATTCCTACCAAGAAAGCACTCGAGATCAGCCAGCGTATTGATCAGCCTTTG
GAGTCTTTTCGCCAATTACTGAGTCCGAGTGACTTTGACCCTTACTATTGCAGCGAACGTTTTCTGATCGCAACCACCGA
CTATGCGATGCAAACTATCTTGCCTTATGCATTGCCTAAGATTTATGAACAAGCGCCGAACATCTCTTTGGAGTTTGCAC
CATTGCAGCATGAGCATTTGTTTAAACAGCTCAGCACCGAACGTGTCGATATGGCGATTTGTCGCCCGAGTGGCAGCATT
GCACCACTTCATCAAGAGGTATTGGGGCCGGTCGGTGTGTCGTGTCTGTTATCTAAGAATCACCCATTAGCCGATAAGCC
TTTAAGCCTTGAAGACTATGTATCACTCCCGCACGCGATGATTGCGATCAGTGATGGTGTTAAGGCTTTATTAGACAACG
CGTTAGCCAATCAACAGCCTCGTAAAATGGTGTTGCGTGCTTATCACCTTGAAGCGGCATTGGCGATTGTCGATAGAATG
CCGTTGGTGATTACTGTGCCTGCTGATTTGGCTTATTTGGTGGCGGAGCGTTATGACTTGGTTGTTAAGCCATTACCATT
TGAATTTATGCCGTTTGATTACTCACTGATCTGGCACTCGCGTTGCGATTCTTCTGCCTCGCAACAATGGTTAAGAAGAG
TAGTAAAAGAAGAATGTGGTGAGCTGATTCAGAAGCGTATTGCGGATGTAGGTTTGGGTTAA

Upstream 100 bases:

>100_bases
TTCTTGGGCTTCCCCGCGTAATTGCGGGATTTTTTTTATCTAAAGCATGCTATAAACAACTTAGTGATCAATGATAATTG
TATACAGCTAGGTAAGTGGC

Downstream 100 bases:

>100_bases
CTGAGATCTCGCTTTAGTTTACTCGATCCAAATGACAAAAACGCAAAAGGGCTGATTACTATCAGCCCTTTGTTATTCTG
GGTTACGGAAGTTTAATTTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Symbiotic regulator homolog 2 [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MELEDIYRRDLNLLVALKVLIEEGSVSQAALRLNLSQSATSRVLGRLRELLNDPLFTRQGQHLIPTKKALEISQRIDQPL
ESFRQLLSPSDFDPYYCSERFLIATTDYAMQTILPYALPKIYEQAPNISLEFAPLQHEHLFKQLSTERVDMAICRPSGSI
APLHQEVLGPVGVSCLLSKNHPLADKPLSLEDYVSLPHAMIAISDGVKALLDNALANQQPRKMVLRAYHLEAALAIVDRM
PLVITVPADLAYLVAERYDLVVKPLPFEFMPFDYSLIWHSRCDSSASQQWLRRVVKEECGELIQKRIADVGLG

Sequences:

>Translated_313_residues
MELEDIYRRDLNLLVALKVLIEEGSVSQAALRLNLSQSATSRVLGRLRELLNDPLFTRQGQHLIPTKKALEISQRIDQPL
ESFRQLLSPSDFDPYYCSERFLIATTDYAMQTILPYALPKIYEQAPNISLEFAPLQHEHLFKQLSTERVDMAICRPSGSI
APLHQEVLGPVGVSCLLSKNHPLADKPLSLEDYVSLPHAMIAISDGVKALLDNALANQQPRKMVLRAYHLEAALAIVDRM
PLVITVPADLAYLVAERYDLVVKPLPFEFMPFDYSLIWHSRCDSSASQQWLRRVVKEECGELIQKRIADVGLG
>Mature_313_residues
MELEDIYRRDLNLLVALKVLIEEGSVSQAALRLNLSQSATSRVLGRLRELLNDPLFTRQGQHLIPTKKALEISQRIDQPL
ESFRQLLSPSDFDPYYCSERFLIATTDYAMQTILPYALPKIYEQAPNISLEFAPLQHEHLFKQLSTERVDMAICRPSGSI
APLHQEVLGPVGVSCLLSKNHPLADKPLSLEDYVSLPHAMIAISDGVKALLDNALANQQPRKMVLRAYHLEAALAIVDRM
PLVITVPADLAYLVAERYDLVVKPLPFEFMPFDYSLIWHSRCDSSASQQWLRRVVKEECGELIQKRIADVGLG

Specific function: Acts in trans to stimulate nod gene expression (Potential) [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=304, Percent_Identity=28.6184210526316, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1789204, Length=259, Percent_Identity=25.0965250965251, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790147, Length=309, Percent_Identity=24.5954692556634, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081766, Length=269, Percent_Identity=26.7657992565056, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35326; Mature: 35326

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELEDIYRRDLNLLVALKVLIEEGSVSQAALRLNLSQSATSRVLGRLRELLNDPLFTRQG
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCHHHHHHHHHHHHHHHHCCCCCCCCC
QHLIPTKKALEISQRIDQPLESFRQLLSPSDFDPYYCSERFLIATTDYAMQTILPYALPK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHH
IYEQAPNISLEFAPLQHEHLFKQLSTERVDMAICRPSGSIAPLHQEVLGPVGVSCLLSKN
HHHHCCCCEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHCHHHEEECC
HPLADKPLSLEDYVSLPHAMIAISDGVKALLDNALANQQPRKMVLRAYHLEAALAIVDRM
CCCCCCCCCHHHHHCCCHHEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
PLVITVPADLAYLVAERYDLVVKPLPFEFMPFDYSLIWHSRCDSSASQQWLRRVVKEECG
CEEEECCHHHHHHHHHHHHHEECCCCCEECCCCCEEEEHHHCCCHHHHHHHHHHHHHHHH
ELIQKRIADVGLG
HHHHHHHHHCCCC
>Mature Secondary Structure
MELEDIYRRDLNLLVALKVLIEEGSVSQAALRLNLSQSATSRVLGRLRELLNDPLFTRQG
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCHHHHHHHHHHHHHHHHCCCCCCCCC
QHLIPTKKALEISQRIDQPLESFRQLLSPSDFDPYYCSERFLIATTDYAMQTILPYALPK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHH
IYEQAPNISLEFAPLQHEHLFKQLSTERVDMAICRPSGSIAPLHQEVLGPVGVSCLLSKN
HHHHCCCCEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHCHHHEEECC
HPLADKPLSLEDYVSLPHAMIAISDGVKALLDNALANQQPRKMVLRAYHLEAALAIVDRM
CCCCCCCCCHHHHHCCCHHEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
PLVITVPADLAYLVAERYDLVVKPLPFEFMPFDYSLIWHSRCDSSASQQWLRRVVKEECG
CEEEECCHHHHHHHHHHHHHEECCCCCEECCCCCEEEEHHHCCCHHHHHHHHHHHHHHHH
ELIQKRIADVGLG
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]