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The map label for this gene is ydeI

Identifier: 218705020

GI number: 218705020

Start: 1833619

End: 1834011

Strand: Reverse

Name: ydeI

Synonym: ECUMN_1804

Alternate gene names: 218705020

Gene position: 1834011-1833619 (Counterclockwise)

Preceding gene: 218705021

Following gene: 218705019

Centisome position: 35.26

GC content: 47.07

Gene sequence:

>393_bases
ATGAAATTTCAGGCCATTGTATTAGCAAGTTTTCTTGTCATGCCTTATGCGTTGGCAGATGACCAGGGCGGTTTAAAACA
GGATGCAGCGCCACCGCCGCCTCATGCAATAGAAGATGGCTATCGCGGAACCGATGATGCAAAAAAAATGACCGTAGATT
TCGCAAAAACCATGCATGATGGCGCTTCGGTTTCACTACGCGGTAATTTGATTTCTCACAAAGGAGAGGACCGTTACGTT
TTTCGCGATAAGAGCGGTGAAATTAATGTTGTTATTCCTGCGGCAGTCTTTGATGGACGAGAAGTTCAGCCGGACCAGAT
GATCAACATTAGCGGCAGTCTGGATAAGAAAAGCGCGCCGGCCGTCGTTCGGGTCACTCATTTGCAGAAATAA

Upstream 100 bases:

>100_bases
TTTTAAATGCCTTATAACAATTGGCAGTATTCTTATTTGTCAATTATAAAAATAGCAACCAGACTTAATAAGTCAAACCA
AACGCAATTAAGGAGTCAGT

Downstream 100 bases:

>100_bases
AAATAAATGAGCCTGATGGCCTGAACTACTGGGCCATTAGGGTATTGGTTTATGCTATTTGTCATCCTTTTAATTGCGAT
AATGCAGGCTTAATTTACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGTDDAKKMTVDFAKTMHDGASVSLRGNLISHKGEDRYV
FRDKSGEINVVIPAAVFDGREVQPDQMINISGSLDKKSAPAVVRVTHLQK

Sequences:

>Translated_130_residues
MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGTDDAKKMTVDFAKTMHDGASVSLRGNLISHKGEDRYV
FRDKSGEINVVIPAAVFDGREVQPDQMINISGSLDKKSAPAVVRVTHLQK
>Mature_130_residues
MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGTDDAKKMTVDFAKTMHDGASVSLRGNLISHKGEDRYV
FRDKSGEINVVIPAAVFDGREVQPDQMINISGSLDKKSAPAVVRVTHLQK

Specific function: Unknown

COG id: COG3111

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787817, Length=130, Percent_Identity=100, Blast_Score=266, Evalue=4e-73,
Organism=Escherichia coli, GI1789401, Length=129, Percent_Identity=31.7829457364341, Blast_Score=69, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDEI_ECOLI (P31130)

Other databases:

- EMBL:   M96235
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   C64908
- RefSeq:   AP_002157.1
- RefSeq:   NP_416054.1
- ProteinModelPortal:   P31130
- SMR:   P31130
- DIP:   DIP-11678N
- MINT:   MINT-1260141
- STRING:   P31130
- EnsemblBacteria:   EBESCT00000002702
- EnsemblBacteria:   EBESCT00000014572
- GeneID:   946068
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW1529
- KEGG:   eco:b1536
- EchoBASE:   EB1597
- EcoGene:   EG11644
- eggNOG:   COG3111
- GeneTree:   EBGT00050000009905
- HOGENOM:   HBG671169
- OMA:   MTPPVVR
- ProtClustDB:   PRK10053
- BioCyc:   EcoCyc:EG11644-MONOMER
- Genevestigator:   P31130
- InterPro:   IPR016052
- InterPro:   IPR005220
- Gene3D:   G3DSA:2.40.50.200
- TIGRFAMs:   TIGR00156

Pfam domain/function: PF04076 BOF; SSF101756 DUF388

EC number: NA

Molecular weight: Translated: 14121; Mature: 14121

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGTDDAKKMTVDFAKTMHD
CCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
GASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREVQPDQMINISGSLDKKSAP
CCEEEEECCEECCCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCC
AVVRVTHLQK
EEEEEEECCC
>Mature Secondary Structure
MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGTDDAKKMTVDFAKTMHD
CCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
GASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREVQPDQMINISGSLDKKSAP
CCEEEEECCEECCCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCCCCCC
AVVRVTHLQK
EEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383113; 9097039; 9278503