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The map label for this gene is ybgQ [H]

Identifier: 218704035

GI number: 218704035

Start: 849271

End: 851772

Strand: Reverse

Name: ybgQ [H]

Synonym: ECUMN_0796

Alternate gene names: 218704035

Gene position: 851772-849271 (Counterclockwise)

Preceding gene: 218704036

Following gene: 218704034

Centisome position: 16.37

GC content: 49.32

Gene sequence:

>2502_bases
TTGGCGGCGTCATCGCCGCCTTTCTTCAAATATTTATCAGGTATGGACACCGTGAATATTTATCGACTCTCTTTTATATC
CTGCCTGGTCATGGCGATACCTTCCGCATTGGCGGTCGAATTCAACCTGAATGTCCTCGATAAATCGATGCGAGATCGCA
TTGATATTTCATTATTAAAGGGAAAAGGGGGCATTGCTCCCGGTGAATATTTTGTTAGCGTTGCAGTAAATAACAACCAA
ATCAGTAACGGACAAAAAATTGACTGGAAAAAGAACGGTGACCAAACCATTCCGTGTATTAATGATTTACTGGTAGATAA
ATTTGGTTTAAAACCTGAAGTTCGTCAGTCGTTACCACGGTTAAACCAGTGCGTCGATTTTAGCTCCCGGCCTGAAATTC
TCTTCATTTTTGATCAGGCTAGCCAGCAACTGAATATCACTATTCCACAAGCCTGGCTGGCGTGGCACTCAGATAACTGG
ACTCCCCCCTCAACATGGAAAGAAGGTGTCGCCGGCGTCCTGATGGACTACAACCTGTTTGCCAGCAGCTACCGCCCACA
GGATGGTAGCAACAGCACTAACCTGAACGCCTATGGAACAGCCGGAATTAACGCGGGAGCATGGCGTTTACGCAGTGATT
ACCAATTGAATCAGACCGATAGCGATGATAACCATGAACAGTCAGGCGAAATATCACGCACCTATCTTTTTCGTCCATTA
CCGCAATTAGGTTCAAAATTAACCCTTGGTGAAACGGATTTCAGTTCCAATATTTTCGACGGCTTTTCTTATACCGGCGC
GGCACTGGCAAGTGACGATCGGATGTTACCGTGGGAGCTACGCGGCTACGCCCCACAAATCAGCGGCATTGCACAAACCA
ACGCCACCGTCACCGTGAGTCACTCAGGGCGAGTTATTTACCAGAAAAAAGTCCCACCAGGTCCGTTTATCATTGATGAC
CTTAATCAGTCCGTCCAGGGTACGTTGGATGTCAAAGTGACGGAAGAAGATGGTCGGGTGAACAATTTCCAGGTTTCGGC
AGCATCGACGCCTTTCCTTACGCGCCAGGGGCAGGTTCGCTATAAACTTGCTGCCGGTCAGCCGCGAACATCTATGTCTC
ATCAAACTGAAAATGAAACCTTTTTTAGCAATGAAGTTTCCTGGGGGATGCTGTCAAATACCTCACTGTACGGCGGCCTG
CTGATTTCGGGTGACAACTACCATTCTGCCGCAATGGGTATCGGGCAAAATATGCTCTGGCTTGGTGCATTGTCGTTTGA
TGTCACCTGGGCCAGTAGTCAGTTTGATACTCAGCAAGACGAGCGGGGCTTAAGTTACCGCTTTAATTACAGCAAACAAG
TGGATGCCACTAACAGCACGATTTCGCTCGCCGCTTATCGCTTCTCAGATCGTCATTTTCACAGCTACGCCAACTATCTG
GATCACAAATACAACGACAACGATGCGCAGGACGAAAAACAGACGATCAGCTTATCCGTGGGGCAACCGATTACCCCACT
GAACCTCAATCTGTACGCCAACCTGCTGCATCAAACCTGGTGGAATGCAGACGCCTCCACGACCGCCAACATCACGGCGG
GTTTTAATGTTGATATTGGTAACTGGAGAGATATCTCGATCTCGACGTCATTCAATACAACCCATTACGAAGATAAAGAT
CGCGACAATCAGATTTACCTGTCGATTTCGCTCCCCTTCGGTAACGGGGGGCGGGTCGGTTATGACATGCAAAACAGTAA
TCACAGCACCACGCACCGCATGTCGTGGAATGATACGTTAGATGAACGTAATAGCTGGGGCATGTCTACCGGACTGCAAT
CCGACCGTCCGGATAATGGAGCCCAGGTGAGCGGTAACTATCAGCACCTGAGTTCAGCGGGTGAGTGGGATATTTCTGGT
ACCTATGCCGCCAATGATTACAGTTCCGTCAGCAGCAGCTGGAGCGGTTCTTTCACGGCAACTCAATATGGTGCGGCGTT
CCATCGTCGCAGCTCCACCAATGAACCACGTCTGATGGTCAGTACCGATGGCGTGGCAGATATTCCGGTTCAGGGCAATC
TCGACTACACCAACCATTTTGGCATTGCGGTGGTGCCTTTGATTTCCAGTTACCAGCCTTCCACCGTGGCGGTGAACATG
AATGACTTACCCGACGGCGTAACAGTGGCAGATAACGTTATCAAAGAAACGTGGATTGAAGGCGCGATAGGTTACAAATC
GCTGGCTTCCCGTTCCGGTAAAGACGTTAACCTCATCATTCGCAACGCCAGCGGTCAGTTCCCTCCCCTCGGTGCGGATA
TCCGCCAGGAGGATAGCGGCATTAGCGTGGGAATGGTTGGCGAGGAAGGACACGCCTGGTTAAGTGGAGTCGCTGAAAAT
CAACAATTTACCGTGATCTGGGGTGATAGCCAGCGTTGCTCGATCCATCTTCCTGAACATATGGAAGACACCGCAAATCG
CCTGATTTTACCTTGTCATTAA

Upstream 100 bases:

>100_bases
TCTTTGCGTGGATGGAACAAATTGATCAGGCTACGCCCGTAACACCAGGCGCAGTTACGGCGAATGCGACCTACGTACTG
GATTATAAATAAGTATCACT

Downstream 100 bases:

>100_bases
TTAAGGAAATGAAAAATGACATTTATGAAAGGACTTCCCCTTTTGTTGTTGATTGCCAGTCTGTGCAGCTACGCTGCGCT
ACAACCCGATCGCACTCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 833; Mature: 832

Protein sequence:

>833_residues
MAASSPPFFKYLSGMDTVNIYRLSFISCLVMAIPSALAVEFNLNVLDKSMRDRIDISLLKGKGGIAPGEYFVSVAVNNNQ
ISNGQKIDWKKNGDQTIPCINDLLVDKFGLKPEVRQSLPRLNQCVDFSSRPEILFIFDQASQQLNITIPQAWLAWHSDNW
TPPSTWKEGVAGVLMDYNLFASSYRPQDGSNSTNLNAYGTAGINAGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPL
PQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTVSHSGRVIYQKKVPPGPFIIDD
LNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRTSMSHQTENETFFSNEVSWGMLSNTSLYGGL
LISGDNYHSAAMGIGQNMLWLGALSFDVTWASSQFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYL
DHKYNDNDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGNWRDISISTSFNTTHYEDKD
RDNQIYLSISLPFGNGGRVGYDMQNSNHSTTHRMSWNDTLDERNSWGMSTGLQSDRPDNGAQVSGNYQHLSSAGEWDISG
TYAANDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNM
NDLPDGVTVADNVIKETWIEGAIGYKSLASRSGKDVNLIIRNASGQFPPLGADIRQEDSGISVGMVGEEGHAWLSGVAEN
QQFTVIWGDSQRCSIHLPEHMEDTANRLILPCH

Sequences:

>Translated_833_residues
MAASSPPFFKYLSGMDTVNIYRLSFISCLVMAIPSALAVEFNLNVLDKSMRDRIDISLLKGKGGIAPGEYFVSVAVNNNQ
ISNGQKIDWKKNGDQTIPCINDLLVDKFGLKPEVRQSLPRLNQCVDFSSRPEILFIFDQASQQLNITIPQAWLAWHSDNW
TPPSTWKEGVAGVLMDYNLFASSYRPQDGSNSTNLNAYGTAGINAGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPL
PQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTVSHSGRVIYQKKVPPGPFIIDD
LNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRTSMSHQTENETFFSNEVSWGMLSNTSLYGGL
LISGDNYHSAAMGIGQNMLWLGALSFDVTWASSQFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYL
DHKYNDNDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGNWRDISISTSFNTTHYEDKD
RDNQIYLSISLPFGNGGRVGYDMQNSNHSTTHRMSWNDTLDERNSWGMSTGLQSDRPDNGAQVSGNYQHLSSAGEWDISG
TYAANDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNM
NDLPDGVTVADNVIKETWIEGAIGYKSLASRSGKDVNLIIRNASGQFPPLGADIRQEDSGISVGMVGEEGHAWLSGVAEN
QQFTVIWGDSQRCSIHLPEHMEDTANRLILPCH
>Mature_832_residues
AASSPPFFKYLSGMDTVNIYRLSFISCLVMAIPSALAVEFNLNVLDKSMRDRIDISLLKGKGGIAPGEYFVSVAVNNNQI
SNGQKIDWKKNGDQTIPCINDLLVDKFGLKPEVRQSLPRLNQCVDFSSRPEILFIFDQASQQLNITIPQAWLAWHSDNWT
PPSTWKEGVAGVLMDYNLFASSYRPQDGSNSTNLNAYGTAGINAGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPLP
QLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTVSHSGRVIYQKKVPPGPFIIDDL
NQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRTSMSHQTENETFFSNEVSWGMLSNTSLYGGLL
ISGDNYHSAAMGIGQNMLWLGALSFDVTWASSQFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLD
HKYNDNDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGNWRDISISTSFNTTHYEDKDR
DNQIYLSISLPFGNGGRVGYDMQNSNHSTTHRMSWNDTLDERNSWGMSTGLQSDRPDNGAQVSGNYQHLSSAGEWDISGT
YAANDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMN
DLPDGVTVADNVIKETWIEGAIGYKSLASRSGKDVNLIIRNASGQFPPLGADIRQEDSGISVGMVGEEGHAWLSGVAENQ
QFTVIWGDSQRCSIHLPEHMEDTANRLILPCH

Specific function: Could be involved in the export and assembly of the putative ybgD fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=816, Percent_Identity=93.1372549019608, Blast_Score=1533, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=867, Percent_Identity=28.719723183391, Blast_Score=280, Evalue=3e-76,
Organism=Escherichia coli, GI1789533, Length=784, Percent_Identity=29.3367346938776, Blast_Score=266, Evalue=6e-72,
Organism=Escherichia coli, GI1786744, Length=790, Percent_Identity=28.2278481012658, Blast_Score=265, Evalue=1e-71,
Organism=Escherichia coli, GI1786332, Length=872, Percent_Identity=27.0642201834862, Blast_Score=253, Evalue=4e-68,
Organism=Escherichia coli, GI1787172, Length=887, Percent_Identity=26.1555806087937, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI1788427, Length=805, Percent_Identity=26.3354037267081, Blast_Score=209, Evalue=5e-55,
Organism=Escherichia coli, GI1789610, Length=783, Percent_Identity=24.7765006385696, Blast_Score=116, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 92000; Mature: 91869

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASSPPFFKYLSGMDTVNIYRLSFISCLVMAIPSALAVEFNLNVLDKSMRDRIDISLLK
CCCCCCCHHHHHCCCCCEEHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHCCEEEEEEE
GKGGIAPGEYFVSVAVNNNQISNGQKIDWKKNGDQTIPCINDLLVDKFGLKPEVRQSLPR
CCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
LNQCVDFSSRPEILFIFDQASQQLNITIPQAWLAWHSDNWTPPSTWKEGVAGVLMDYNLF
HHHHCCCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCHHHHHCCCEEEEEHHHH
ASSYRPQDGSNSTNLNAYGTAGINAGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPL
HCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCH
PQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTVS
HHHCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCCEEECCCEEEEE
HSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVR
CCCEEEEEECCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEECCCCEE
YKLAAGQPRTSMSHQTENETFFSNEVSWGMLSNTSLYGGLLISGDNYHSAAMGIGQNMLW
EEEECCCCCCCCCCCCCCCEEECCCCCCCEEECCCEECEEEEECCCCCHHHHHCCCCEEE
LGALSFDVTWASSQFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYL
EEEEEEEEEECCCCCCCCHHHCCCEEEECCCCCCCCCCCEEEEEEEEECCHHHHHHHHHH
DHKYNDNDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIG
CCCCCCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECC
NWRDISISTSFNTTHYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSNHSTTHRMSWNDTL
CEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEECCCCCC
DERNSWGMSTGLQSDRPDNGAQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSWSGSFTA
CCCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCEEE
TQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNM
HHHHHHHHHCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEC
NDLPDGVTVADNVIKETWIEGAIGYKSLASRSGKDVNLIIRNASGQFPPLGADIRQEDSG
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
ISVGMVGEEGHAWLSGVAENQQFTVIWGDSQRCSIHLPEHMEDTANRLILPCH
CEEEEECCCCCHHHHHCCCCCEEEEEECCCCEEEEECCHHHHHHHCCEEEECC
>Mature Secondary Structure 
AASSPPFFKYLSGMDTVNIYRLSFISCLVMAIPSALAVEFNLNVLDKSMRDRIDISLLK
CCCCCCHHHHHCCCCCEEHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHCCEEEEEEE
GKGGIAPGEYFVSVAVNNNQISNGQKIDWKKNGDQTIPCINDLLVDKFGLKPEVRQSLPR
CCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
LNQCVDFSSRPEILFIFDQASQQLNITIPQAWLAWHSDNWTPPSTWKEGVAGVLMDYNLF
HHHHCCCCCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCCCHHHHHCCCEEEEEHHHH
ASSYRPQDGSNSTNLNAYGTAGINAGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPL
HCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCH
PQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTVS
HHHCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCCCCEEECCCEEEEE
HSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVR
CCCEEEEEECCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEECCCCEE
YKLAAGQPRTSMSHQTENETFFSNEVSWGMLSNTSLYGGLLISGDNYHSAAMGIGQNMLW
EEEECCCCCCCCCCCCCCCEEECCCCCCCEEECCCEECEEEEECCCCCHHHHHCCCCEEE
LGALSFDVTWASSQFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYL
EEEEEEEEEECCCCCCCCHHHCCCEEEECCCCCCCCCCCEEEEEEEEECCHHHHHHHHHH
DHKYNDNDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIG
CCCCCCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECC
NWRDISISTSFNTTHYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSNHSTTHRMSWNDTL
CEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEECCCCCC
DERNSWGMSTGLQSDRPDNGAQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSWSGSFTA
CCCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCEEE
TQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNM
HHHHHHHHHCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEC
NDLPDGVTVADNVIKETWIEGAIGYKSLASRSGKDVNLIIRNASGQFPPLGADIRQEDSG
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
ISVGMVGEEGHAWLSGVAENQQFTVIWGDSQRCSIHLPEHMEDTANRLILPCH
CEEEEECCCCCHHHHHCCCCCEEEEEECCCCEEEEECCHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]