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The map label for this gene is ybgD [H]

Identifier: 218704036

GI number: 218704036

Start: 851781

End: 852434

Strand: Reverse

Name: ybgD [H]

Synonym: ECUMN_0797

Alternate gene names: 218704036

Gene position: 852434-851781 (Counterclockwise)

Preceding gene: 218704037

Following gene: 218704035

Centisome position: 16.39

GC content: 45.57

Gene sequence:

>654_bases
TTGTTAAATAAAACCAAATACATTCAACTGTCAGTTAATATATTCTTGCCTCGCAACACTCTATCTCATTATTTAAAGGA
CTCAGCTATGTTTAAAGGACAAAAAACATTGGCCGCACTGGCCGTATCTCTGCTGTTCACTGCACCTGTTTATGCGGCTG
ATGAAGGATCCGGTGAAATTCACTTTAAAGGTGAAGTTATTGAAGCACCGTGTGAAATACATCAGGATGATATTGATAAA
GAAGTTGAACTCGGTCAGGTGACCACCAGCCACATTAATCAGTCGCATCACAGCGATGCCGTTGCTGTCGACCTGCGCTT
AGTCAACTGCGATCTGGAAAACTCCAACAACGGTTCCGGCGGCAAGATTTCTAAAGTTGCAGTCACCTTTGACAGCTCAG
CGAAAACCACCGGCGCAGATCCGATTCTCAACAACACCAGCACGGGTGAAGCGACCGGTGTCGGCGTGCGTTTAATGAAT
AAAGATCAAAGCAATATCGTTTTAGGCACCGCTACTCCAGATATCGACCTGGCACCAACCTCCAGCGAACAAACGTTAAA
TTTCTTTGCGTGGATGGAACAAATTGATCAGGCTACGCCCGTAACACCAGGCGCAGTTACGGCGAATGCGACCTACGTAC
TGGATTATAAATAA

Upstream 100 bases:

>100_bases
TGAAAATTATGCATATCCATCCCACCCCATCTTTCATCTCATTAAACAATAAATTTATGCACTCAATTATTCCATTCTTT
ATATAACAAGCTTTTTAATA

Downstream 100 bases:

>100_bases
GTATCACTTTGGCGGCGTCATCGCCGCCTTTCTTCAAATATTTATCAGGTATGGACACCGTGAATATTTATCGACTCTCT
TTTATATCCTGCCTGGTCAT

Product: putative fimbrial-like adhesin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLNKTKYIQLSVNIFLPRNTLSHYLKDSAMFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDK
EVELGQVTTSHINQSHHSDAVAVDLRLVNCDLENSNNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMN
KDQSNIVLGTATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTANATYVLDYK

Sequences:

>Translated_217_residues
MLNKTKYIQLSVNIFLPRNTLSHYLKDSAMFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDK
EVELGQVTTSHINQSHHSDAVAVDLRLVNCDLENSNNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMN
KDQSNIVLGTATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTANATYVLDYK
>Mature_217_residues
MLNKTKYIQLSVNIFLPRNTLSHYLKDSAMFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDK
EVELGQVTTSHINQSHHSDAVAVDLRLVNCDLENSNNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMN
KDQSNIVLGTATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTANATYVLDYK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786938, Length=188, Percent_Identity=79.2553191489362, Blast_Score=311, Evalue=2e-86,
Organism=Escherichia coli, GI1789422, Length=187, Percent_Identity=37.4331550802139, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1790769, Length=133, Percent_Identity=34.5864661654135, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786746, Length=188, Percent_Identity=27.6595744680851, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 23272; Mature: 23272

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKTKYIQLSVNIFLPRNTLSHYLKDSAMFKGQKTLAALAVSLLFTAPVYAADEGSGEI
CCCCEEEEEEEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCCCEE
HFKGEVIEAPCEIHQDDIDKEVELGQVTTSHINQSHHSDAVAVDLRLVNCDLENSNNGSG
EEECEEEECCCCCCCCCCCCCEEECEEEHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCC
GKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPT
CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCEECCC
SSEQTLNFFAWMEQIDQATPVTPGAVTANATYVLDYK
CCCHHHHHHHHHHHHHHCCCCCCCCEECCEEEEEEEC
>Mature Secondary Structure
MLNKTKYIQLSVNIFLPRNTLSHYLKDSAMFKGQKTLAALAVSLLFTAPVYAADEGSGEI
CCCCEEEEEEEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCCCEE
HFKGEVIEAPCEIHQDDIDKEVELGQVTTSHINQSHHSDAVAVDLRLVNCDLENSNNGSG
EEECEEEECCCCCCCCCCCCCEEECEEEHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCC
GKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPT
CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCEECCC
SSEQTLNFFAWMEQIDQATPVTPGAVTANATYVLDYK
CCCHHHHHHHHHHHHHHCCCCCCCCEECCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7984428 [H]