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The map label for this gene is yibQ

Identifier: 218702383

GI number: 218702383

Start: 4306220

End: 4307179

Strand: Direct

Name: yibQ

Synonym: ECIAI39_4135

Alternate gene names: 218702383

Gene position: 4306220-4307179 (Clockwise)

Preceding gene: 218702382

Following gene: 218702387

Centisome position: 83.91

GC content: 52.5

Gene sequence:

>960_bases
TTGTTTCCATTTCGTCGTAACGTTCTTGCATTTGCCGCTCTGTTGGCGCTCTCCTCCCCCGTAATTGCTGGCAAACTTGC
CATCGTCATTGATGATTTTGGGTATCGCCCGCACAACGAAAACCAGGTGCTGGCGATGCCTTCCGCTATCTCCGTCGCTG
TATTACCCGATTCACCGCACGCCAGAGAGATGGCGACCAAAGCGCATAACAGCGGTCACGAAGTGTTGATTCATCTACCG
ATGGCACCACTGAGTAAACAGCCGCTGGAGAAAAATACGCTACGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTAT
TCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACATGGGCAGCAAGATGACCTCTAACCTGTTTG
GTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAACCATCGGTAATACCCAGGCG
ATGCGCGCCGCGCAAGGCACTGGCGTGAAGGTGATCAAACGGAAGGTGTTCCTCGACGATTCGCAAAATGAAGCGGACAT
CCGTGTGCAATTCAATCGCGCAATTGACCTGGCGCGTCGCAACGGTTCAACCATTGCCATTGGACATCCTCACCCTTCAA
CGGTACGCGTGCTACAACAGATGGTTTATAACCTGCCGCCAGACATTACGCTGGTGAAAGCCAGCAGCTTGTTGAATGAA
CCGCAGGTTGATACGTCTACACCGCCGAAAAACACTGTGCCCGACACACCGCGTAATCCATTCCGTGGCGTGAAGCTGTG
CAAACCGAAGAAGCCGCTGGAACCTGTTTATGCTAATCGCTTCTTTGAAGTATTAAGCGAAAGCATCAGCCAGAGCACGC
TGATCGTTTACTTCCAGCATCAGTGGCAAGGCTGGGGCAAACAGCCTGAAGCGGCGAAGCTTAACGCTAGCGCAAATTAA

Upstream 100 bases:

>100_bases
GGTGGGCAGCAGTGGCGGTCAGGGTCGGCCTTCACTCTATTTCGAAATTCGCCGCCAGGGTCAGGCGGTCAATCCACAGC
CGTGGTTGGGAAGATAAGTT

Downstream 100 bases:

>100_bases
AGGCGCTACGCGTAATGCGATGGTGCGACCGCGTTTTGTCGCGCCATTGCCATAAGCGGAAAGACCACAGTAACGCCTGA
TAACCCACCTTCACGCTGCG

Product: putative polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MFPFRRNVLAFAALLALSSPVIAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLP
MAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
MRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE
PQVDTSTPPKNTVPDTPRNPFRGVKLCKPKKPLEPVYANRFFEVLSESISQSTLIVYFQHQWQGWGKQPEAAKLNASAN

Sequences:

>Translated_319_residues
MFPFRRNVLAFAALLALSSPVIAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLP
MAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
MRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE
PQVDTSTPPKNTVPDTPRNPFRGVKLCKPKKPLEPVYANRFFEVLSESISQSTLIVYFQHQWQGWGKQPEAAKLNASAN
>Mature_319_residues
MFPFRRNVLAFAALLALSSPVIAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLP
MAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
MRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE
PQVDTSTPPKNTVPDTPRNPFRGVKLCKPKKPLEPVYANRFFEVLSESISQSTLIVYFQHQWQGWGKQPEAAKLNASAN

Specific function: Unknown

COG id: COG2861

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0755 [H]

Homologues:

Organism=Escherichia coli, GI87082298, Length=319, Percent_Identity=98.1191222570533, Blast_Score=650, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006837
- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF04748 Polysacc_deac_2 [H]

EC number: NA

Molecular weight: Translated: 35395; Mature: 35395

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPFRRNVLAFAALLALSSPVIAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPH
CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEECCEEEEEEECCCCC
AREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGI
HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
NNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQAMRAAQGTGVKVIKRKVFLDD
CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHHCCCCHHHHHEEEEECC
SQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE
CCCCCEEEEEEHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCC
PQVDTSTPPKNTVPDTPRNPFRGVKLCKPKKPLEPVYANRFFEVLSESISQSTLIVYFQH
CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEE
QWQGWGKQPEAAKLNASAN
ECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFPFRRNVLAFAALLALSSPVIAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPH
CCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEECCEEEEEEECCCCC
AREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGI
HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
NNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQAMRAAQGTGVKVIKRKVFLDD
CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHHCCCCHHHHHEEEEECC
SQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE
CCCCCEEEEEEHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCC
PQVDTSTPPKNTVPDTPRNPFRGVKLCKPKKPLEPVYANRFFEVLSESISQSTLIVYFQH
CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEE
QWQGWGKQPEAAKLNASAN
ECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]