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The map label for this gene is ygcR

Identifier: 218701254

GI number: 218701254

Start: 3055490

End: 3056269

Strand: Reverse

Name: ygcR

Synonym: ECIAI39_2952

Alternate gene names: 218701254

Gene position: 3056269-3055490 (Counterclockwise)

Preceding gene: 218701255

Following gene: 218701253

Centisome position: 59.55

GC content: 57.05

Gene sequence:

>780_bases
ATGAACATTCTGTTAGCGTTTAAAGCCGAACCGGATGCCGGAATGCTGGCGGAAAAAGAGTGGCAGGCGGCGGCTCAGGG
TAATATTGGACCAGATGTTTCGCTACTGCGAAGTTTACTCGGTGCTGATGAACAGGCTGCCGCCGCGCTGCTGTTGGCGC
AGAGAAAAAATGGTACGCCGATGTCTTTAACCGCGTTGAGCATGGGGGATGAACGGGCGTTGCACTGGCTGCGCTATCTC
ATGGCTCTTGGGTTTGAGGACGCAGTATTGCTGGAGACGGCGGCAGATCTGCGCTTTGCGCCGGAATTTGTCGCTCGCCA
TATTGCCGAGTGGCAGCATCAGAATTCGCTGGATCTGATCATTACCGGCTGCCAAAGCAGCGAAGGACAGAATGGGCAAA
CGCCATTTTTGCTGGCGGAAATGCTGGGCTGGCCCTGTTTCACCCAGGTGGAGCGTTTCACACTCGACGCGCCGTTTATC
ACCCTCGAACAGCGTACTGAAAATGGGGTGCGCTGTTGCCGGGTTCGCTTGCCTGCGGTGATTGCCGTGCGTCAGTGCGG
TGAAGTGGCCTTGCCAGTACCGGGAATGCGCCAGCGAATGGCGGCGGGGAAAGCGGAGATTACCCGCGAAACTGTTGCCG
CGGAAGCGCCAGCGATACAGTGCCTGCAACTGGCAAGGCCAGAGCAACGACGCAGAGCGGCGCTGATTGATGGGCAAACG
GTAGCAGAAAAAGCGCAAAAGCTATGGCAGGACTATTTACGCCAAAGGATGCAGCCATGA

Upstream 100 bases:

>100_bases
CTGGCGGCAGTGTTGTTGGTTGGTTTTGTTGTGACCTGGCTATGGGCACCAGAAACCAAAGCACTCCCGCTGGTGGCGGC
GGGAAATGTAGGAGGTGCGA

Downstream 100 bases:

>100_bases
ATATCGCAATTGTGACAATAAATCAGGAGAATGCCGCAATAGCGAGCTGGCTGGCGGCGCAGGATTTCAGCGGTTGTACT
CTGGCGCACTGGCAGATTGA

Product: putative flavoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNILLAFKAEPDAGMLAEKEWQAAAQGNIGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYL
MALGFEDAVLLETAADLRFAPEFVARHIAEWQHQNSLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFI
TLEQRTENGVRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEITRETVAAEAPAIQCLQLARPEQRRRAALIDGQT
VAEKAQKLWQDYLRQRMQP

Sequences:

>Translated_259_residues
MNILLAFKAEPDAGMLAEKEWQAAAQGNIGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYL
MALGFEDAVLLETAADLRFAPEFVARHIAEWQHQNSLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFI
TLEQRTENGVRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEITRETVAAEAPAIQCLQLARPEQRRRAALIDGQT
VAEKAQKLWQDYLRQRMQP
>Mature_259_residues
MNILLAFKAEPDAGMLAEKEWQAAAQGNIGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYL
MALGFEDAVLLETAADLRFAPEFVARHIAEWQHQNSLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFI
TLEQRTENGVRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEITRETVAAEAPAIQCLQLARPEQRRRAALIDGQT
VAEKAQKLWQDYLRQRMQP

Specific function: May play a role in a redox process [H]

COG id: COG2086

COG function: function code C; Electron transfer flavoprotein, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF beta-subunit/fixA family [H]

Homologues:

Organism=Escherichia coli, GI87082158, Length=259, Percent_Identity=94.2084942084942, Blast_Score=479, Evalue=1e-137,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014730
- InterPro:   IPR012255
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF [H]

EC number: NA

Molecular weight: Translated: 28647; Mature: 28647

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILLAFKAEPDAGMLAEKEWQAAAQGNIGPDVSLLRSLLGADEQAAAALLLAQRKNGTP
CCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCC
MSLTALSMGDERALHWLRYLMALGFEDAVLLETAADLRFAPEFVARHIAEWQHQNSLDLI
EEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEE
ITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGVRCCRVRLPAV
EECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
IAVRQCGEVALPVPGMRQRMAAGKAEITRETVAAEAPAIQCLQLARPEQRRRAALIDGQT
HHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCHH
VAEKAQKLWQDYLRQRMQP
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNILLAFKAEPDAGMLAEKEWQAAAQGNIGPDVSLLRSLLGADEQAAAALLLAQRKNGTP
CCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCC
MSLTALSMGDERALHWLRYLMALGFEDAVLLETAADLRFAPEFVARHIAEWQHQNSLDLI
EEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEE
ITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGVRCCRVRLPAV
EECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
IAVRQCGEVALPVPGMRQRMAAGKAEITRETVAAEAPAIQCLQLARPEQRRRAALIDGQT
HHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCCCHH
VAEKAQKLWQDYLRQRMQP
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]