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The map label for this gene is lomR [H]

Identifier: 218700320

GI number: 218700320

Start: 2038856

End: 2039329

Strand: Reverse

Name: lomR [H]

Synonym: ECIAI39_1977

Alternate gene names: 218700320

Gene position: 2039329-2038856 (Counterclockwise)

Preceding gene: 218700321

Following gene: 218700318

Centisome position: 39.74

GC content: 51.9

Gene sequence:

>474_bases
ATGCGTAAATTATGTGCTGTTATTCTGTCCGCAGTAGTCTGGCTGGTTGCCGCTGGTACGCCAGCGAGCGCAGCAGAGCA
TCAGTCCACACTAAGCGCCGGGTATCTTCAGACCCATACTGATATGCCAGGCAGTGATGACCTGAAGGGCATTAACGTGA
AATACCGTTATGAATTTACGGACACGCTGGGGCTGGTGACGTCATTCAGTTATGCCAATGCCAAAGATGAGCAAAAAACG
CATTACAGCGATACCCGCTGGCATGAAGATTCCGTGCGTAACCGCTGGTTCAGCATGATGGCGGGGCCATCTGTACGCGT
GAATGAATGGTTCAGTGCTTATGCGATGGCAGGTGTGGCTTACAGCCGTGTTTCGACGTTCTCCGGGGATTATCTCCGCG
TAACTGACAACAAGGGGAAAACGCACGATGTGCTGATGCGCCGCGCGATAAATGCACTCTATCTTGTGCGATAA

Upstream 100 bases:

>100_bases
TTCAGGTTGGCATCATGAACTGTATGGGCAACGATCTGATTCGCACGGTTAACCTGATTAAATCTGCCCGTGTTGGTTAT
ACAAAGAGCGAGAGGTAATT

Downstream 100 bases:

>100_bases
ATGGCATCCACGCGGCGTTTCATTATTTGAAAAAGAATTACATTTCAGGTTGCGTTATGACAGTCCCAACAGGGTGATAG
CGGTAGATCGTTGACAGTCC

Product: putative Lom-like outer membrane protein of prophage

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MRKLCAVILSAVVWLVAAGTPASAAEHQSTLSAGYLQTHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANAKDEQKT
HYSDTRWHEDSVRNRWFSMMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLMRRAINALYLVR

Sequences:

>Translated_157_residues
MRKLCAVILSAVVWLVAAGTPASAAEHQSTLSAGYLQTHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANAKDEQKT
HYSDTRWHEDSVRNRWFSMMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLMRRAINALYLVR
>Mature_157_residues
MRKLCAVILSAVVWLVAAGTPASAAEHQSTLSAGYLQTHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANAKDEQKT
HYSDTRWHEDSVRNRWFSMMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLMRRAINALYLVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ail/ompX/pagC/lom family [H]

Homologues:

Organism=Escherichia coli, GI1787034, Length=128, Percent_Identity=34.375, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000758
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06316 Ail_Lom [H]

EC number: NA

Molecular weight: Translated: 17642; Mature: 17642

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS00694 ENT_VIR_OMP_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLCAVILSAVVWLVAAGTPASAAEHQSTLSAGYLQTHTDMPGSDDLKGINVKYRYEFT
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCCEEEEEEEEH
DTLGLVTSFSYANAKDEQKTHYSDTRWHEDSVRNRWFSMMAGPSVRVNEWFSAYAMAGVA
HHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLMRRAINALYLVR
HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MRKLCAVILSAVVWLVAAGTPASAAEHQSTLSAGYLQTHTDMPGSDDLKGINVKYRYEFT
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCCEEEEEEEEH
DTLGLVTSFSYANAKDEQKTHYSDTRWHEDSVRNRWFSMMAGPSVRVNEWFSAYAMAGVA
HHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLMRRAINALYLVR
HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]