| Definition | Escherichia coli IAI39 chromosome, complete genome. |
|---|---|
| Accession | NC_011750 |
| Length | 5,132,068 |
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The map label for this gene is yuaQ [H]
Identifier: 218700252
GI number: 218700252
Start: 1980462
End: 1983110
Strand: Reverse
Name: yuaQ [H]
Synonym: ECIAI39_1904
Alternate gene names: 218700252
Gene position: 1983110-1980462 (Counterclockwise)
Preceding gene: 218700253
Following gene: 218700248
Centisome position: 38.64
GC content: 45.94
Gene sequence:
>2649_bases ATGAAACTGAAAAAACTCCCCGGGTTTAGTTTGGGACTTATTGCTTTGGCGGTGGGTAATGCATATGCTGAACAGTTTAT TCAGTACGATGAATATAAACATGCTGTGGCAATAAAAGATGGAGAAGTAAAAGATATTGATAATGCGCTAGTTATAACAA CGGGTAATGGAAGTTACGGGGTATCTGTTGCAGGAGAGGGTAGCAATTTAACCATTAACAAAGGCGTCATTGTAACAACG GGTGGTTTATATCCTTCTGGCAATAGTCCTCTAAGCACAGTATATACAGCTAGCGCAGTCGTAAGTGAATATGGCGGTGC AGTTATTTTGCAGGGTAATAATACGATTGTCACAACGGGGGATTACTCAATTGGTTTGCTAAGTCAAACGAATGGAAACC TGAATACTGATACCATAATAAGAGTCAACACTGACGGTTCGGTTAACCCCCATTTATCTTACGAAGGTAATACTTTTATT GTTACTGCGGGTAATCACGCAGTCGGCGTTCTTGCTTGTGCATCTCCTGGAAGCGCGCGTGCGTGTGTATCTTCTCTTGA TGAAGAAAGTACTGCCGATACAGGAAGTAATGAAAATAACGCCAAAGCAAAACTGGATATGGCAAAAGGGGAGATAACAA CCCACGGAACAGAAAGTTATGCCGCTTACGCTAATGGCACTGTCGTCAAGGCGGGTAGCAAGCTTGATTATACCAATGCC AGCGTTACATTAACCGATGTTGATATTACCACGCATGGAGACAATGCTCATGCCATCGCTGCTCGCCAGGGGACTGTTTC ATTTAACCAGGGAGAAATTCATACAACGGGTCCTGACGCCGCGATTGCTAAAATTTATAATGGCGGCAAGGTGACGCTGA AAAATACATCTGCAGTCGCGCATCAGGGGGCTGGAATTGTGCTGGAGTCTTCCATAAATGGTCAGGAAGCAACGGTAGAT ATTTTATCTGGTAGCTCACTACGGTCAGCAAATGAAATCCTCTACAATAAAAATGAGACGAGTAACGTGACCATTACGGA TAGTGAGGTATCATCGGCTGCAGATGTTTTTATTAATAATATTAAAGGTCATTTGGTCATCGATGCATCTAATTCAAAAA TAACGGGTTCAGCCAATCTTTCAACAGATGATAGCACTCATACCTATCTGTCGCTTTCAGATAATAGTACCTGGGATATT AAAACTGACTCAACGGTGAGCAAGCTCACGGTTGACAATAGTACGGTCTATATTTCCCGGGCAGATGGAAAGGCTTTCGA ACCAACAAGATTAACAATAACTGAAAATTACGTTGGTAATAATGGCGTATTGCATCTCAGAACTGAATTGGGTGATGATA ATTCAGCTACGGATAAAGTCGTTATTAATGGAAATACCTCTGGAACAACCCGAGTTAAAGTTACCAATGCTGGCGGCAGC GGGGCTTACACGTTAAATGGGATAGAGATTATCAGCGTTGAGGGGGAATCAAATGGAGAATTTATTAAGGATTCGAGGAT TTTCGCCGGTGCCTACGAATATTCATTAACCCGAGGTAATACCGAAGCGACCAATAAAAACTGGTATCTGACTAACTTCC AGGCAACGAGCGGCGGTGAAACAAACTCCGGAGGAAGTTCAGCGCCTACTGTTGCGCCTACCCCCGTTCTGCGCTCCGAA GCTGGAAGTTACGTCGCCAACCTGGCAGCCGCTAACACTCTTTTTGTTATGCGTCTGAACGATCGTGCAGGTGAAACGCG CTACATCGATCCTGTAACTGAACAGGAGCGTTCAAGCCGACTTTGGCTACGTCAAATTGGCGGGCATAATGCCTGGCGTG ACAGCAACGGACAGTTGAGAACGACCTCGCATCGCTACGTCTCGCAGTTAGGGGCGGAGCTGTTAACCGGTGGTTTTACC GACAGTGACAGTTGGCGTTTGGGAGTGATGGCTGGTTATGCCCGCGACTACAACTCAACTCATTCCAGCGTGTCGGATTA TCGTTCGAAAGGGAGTGTCAGAGGCTATAGCGCAGGGCTGTATGCCACCTGGTTTGCCGATGACATCAGTAAAAAAGGCG CATACATTGACGCCTGGGCGCAATATAGCTGGTTTAAAAACTCGGTGAAAGGGGATGAGTTAGCCTATGAATCCTATAGC GCGAAAGGTGCAACCGTCTCGCTGGAAGCGGGTTACGGTTTTGCCCTGAATAAATCCTTTGGTCTGGAAGCGGCGAAATA TACGTGGATCTTCCAGCCACAGGCACAGGCTATCTGGATGGGCGTCGATCATAATGCGCACACGGAAGCCAATGGCTCAC GTATTGAGAATGACGCAAATAACAACTTCCAGACCCGACTTGGTTTCCGCACCTTTATTCGTACTCAGGAGAAAAACAGC GGTCCTCACGGTGACGACTTTGAACCTTTTGTTGAAATGAACTGGATCCATAACAGTAAAGATTTTGCTGTCTCAATGAA TGGTGTGAAAGTCGAACAAGACGGGGCGCGTAATCTGGGGGAAATTAAACTTGGCGTAAATGGCAATCTGAATCCGTCGG CCAGCGTCTGGGGTAATGTGGGCGTGCAGCTGGGTGATAATGGCTACAATGACACCGCAATGATGGTGGGCCTGAAATAT AAGTTCTGA
Upstream 100 bases:
>100_bases TGTGCTTTTGTTTTTGTCTTTACCCTCCGTTTTGGTAATCTGAACTCATAGGTTATTTGACCAGGAATGTTTGTTAATCC AATGAATGGATGGTTAATCT
Downstream 100 bases:
>100_bases TCCCGCCATTAGCTAAAAAACCGCGTCGATTTCATCGACGCGGTAACATATGAAATATTATTTTTTGCCGATAGCACGCA TGGTGTCATCAATTGCCGTG
Product: putative outer membrane autotransporter barrel, putative pectin lyase fold
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 882; Mature: 882
Protein sequence:
>882_residues MKLKKLPGFSLGLIALAVGNAYAEQFIQYDEYKHAVAIKDGEVKDIDNALVITTGNGSYGVSVAGEGSNLTINKGVIVTT GGLYPSGNSPLSTVYTASAVVSEYGGAVILQGNNTIVTTGDYSIGLLSQTNGNLNTDTIIRVNTDGSVNPHLSYEGNTFI VTAGNHAVGVLACASPGSARACVSSLDEESTADTGSNENNAKAKLDMAKGEITTHGTESYAAYANGTVVKAGSKLDYTNA SVTLTDVDITTHGDNAHAIAARQGTVSFNQGEIHTTGPDAAIAKIYNGGKVTLKNTSAVAHQGAGIVLESSINGQEATVD ILSGSSLRSANEILYNKNETSNVTITDSEVSSAADVFINNIKGHLVIDASNSKITGSANLSTDDSTHTYLSLSDNSTWDI KTDSTVSKLTVDNSTVYISRADGKAFEPTRLTITENYVGNNGVLHLRTELGDDNSATDKVVINGNTSGTTRVKVTNAGGS GAYTLNGIEIISVEGESNGEFIKDSRIFAGAYEYSLTRGNTEATNKNWYLTNFQATSGGETNSGGSSAPTVAPTPVLRSE AGSYVANLAAANTLFVMRLNDRAGETRYIDPVTEQERSSRLWLRQIGGHNAWRDSNGQLRTTSHRYVSQLGAELLTGGFT DSDSWRLGVMAGYARDYNSTHSSVSDYRSKGSVRGYSAGLYATWFADDISKKGAYIDAWAQYSWFKNSVKGDELAYESYS AKGATVSLEAGYGFALNKSFGLEAAKYTWIFQPQAQAIWMGVDHNAHTEANGSRIENDANNNFQTRLGFRTFIRTQEKNS GPHGDDFEPFVEMNWIHNSKDFAVSMNGVKVEQDGARNLGEIKLGVNGNLNPSASVWGNVGVQLGDNGYNDTAMMVGLKY KF
Sequences:
>Translated_882_residues MKLKKLPGFSLGLIALAVGNAYAEQFIQYDEYKHAVAIKDGEVKDIDNALVITTGNGSYGVSVAGEGSNLTINKGVIVTT GGLYPSGNSPLSTVYTASAVVSEYGGAVILQGNNTIVTTGDYSIGLLSQTNGNLNTDTIIRVNTDGSVNPHLSYEGNTFI VTAGNHAVGVLACASPGSARACVSSLDEESTADTGSNENNAKAKLDMAKGEITTHGTESYAAYANGTVVKAGSKLDYTNA SVTLTDVDITTHGDNAHAIAARQGTVSFNQGEIHTTGPDAAIAKIYNGGKVTLKNTSAVAHQGAGIVLESSINGQEATVD ILSGSSLRSANEILYNKNETSNVTITDSEVSSAADVFINNIKGHLVIDASNSKITGSANLSTDDSTHTYLSLSDNSTWDI KTDSTVSKLTVDNSTVYISRADGKAFEPTRLTITENYVGNNGVLHLRTELGDDNSATDKVVINGNTSGTTRVKVTNAGGS GAYTLNGIEIISVEGESNGEFIKDSRIFAGAYEYSLTRGNTEATNKNWYLTNFQATSGGETNSGGSSAPTVAPTPVLRSE AGSYVANLAAANTLFVMRLNDRAGETRYIDPVTEQERSSRLWLRQIGGHNAWRDSNGQLRTTSHRYVSQLGAELLTGGFT DSDSWRLGVMAGYARDYNSTHSSVSDYRSKGSVRGYSAGLYATWFADDISKKGAYIDAWAQYSWFKNSVKGDELAYESYS AKGATVSLEAGYGFALNKSFGLEAAKYTWIFQPQAQAIWMGVDHNAHTEANGSRIENDANNNFQTRLGFRTFIRTQEKNS GPHGDDFEPFVEMNWIHNSKDFAVSMNGVKVEQDGARNLGEIKLGVNGNLNPSASVWGNVGVQLGDNGYNDTAMMVGLKY KF >Mature_882_residues MKLKKLPGFSLGLIALAVGNAYAEQFIQYDEYKHAVAIKDGEVKDIDNALVITTGNGSYGVSVAGEGSNLTINKGVIVTT GGLYPSGNSPLSTVYTASAVVSEYGGAVILQGNNTIVTTGDYSIGLLSQTNGNLNTDTIIRVNTDGSVNPHLSYEGNTFI VTAGNHAVGVLACASPGSARACVSSLDEESTADTGSNENNAKAKLDMAKGEITTHGTESYAAYANGTVVKAGSKLDYTNA SVTLTDVDITTHGDNAHAIAARQGTVSFNQGEIHTTGPDAAIAKIYNGGKVTLKNTSAVAHQGAGIVLESSINGQEATVD ILSGSSLRSANEILYNKNETSNVTITDSEVSSAADVFINNIKGHLVIDASNSKITGSANLSTDDSTHTYLSLSDNSTWDI KTDSTVSKLTVDNSTVYISRADGKAFEPTRLTITENYVGNNGVLHLRTELGDDNSATDKVVINGNTSGTTRVKVTNAGGS GAYTLNGIEIISVEGESNGEFIKDSRIFAGAYEYSLTRGNTEATNKNWYLTNFQATSGGETNSGGSSAPTVAPTPVLRSE AGSYVANLAAANTLFVMRLNDRAGETRYIDPVTEQERSSRLWLRQIGGHNAWRDSNGQLRTTSHRYVSQLGAELLTGGFT DSDSWRLGVMAGYARDYNSTHSSVSDYRSKGSVRGYSAGLYATWFADDISKKGAYIDAWAQYSWFKNSVKGDELAYESYS AKGATVSLEAGYGFALNKSFGLEAAKYTWIFQPQAQAIWMGVDHNAHTEANGSRIENDANNNFQTRLGFRTFIRTQEKNS GPHGDDFEPFVEMNWIHNSKDFAVSMNGVKVEQDGARNLGEIKLGVNGNLNPSASVWGNVGVQLGDNGYNDTAMMVGLKY KF
Specific function: Unknown
COG id: COG3468
COG function: function code MU; Type V secretory pathway, adhesin AidA
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
Organism=Escherichia coli, GI1788565, Length=586, Percent_Identity=28.6689419795222, Blast_Score=199, Evalue=6e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR013425 - InterPro: IPR006315 - InterPro: IPR012332 - InterPro: IPR011050 - InterPro: IPR004899 [H]
Pfam domain/function: PF03797 Autotransporter; PF03212 Pertactin [H]
EC number: NA
Molecular weight: Translated: 93793; Mature: 93793
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKKLPGFSLGLIALAVGNAYAEQFIQYDEYKHAVAIKDGEVKDIDNALVITTGNGSYG CCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEE VSVAGEGSNLTINKGVIVTTGGLYPSGNSPLSTVYTASAVVSEYGGAVILQGNNTIVTTG EEEECCCCEEEEECCEEEEECCCCCCCCCCCHHEEEHHHHHHHCCCEEEEECCCEEEEEC DYSIGLLSQTNGNLNTDTIIRVNTDGSVNPHLSYEGNTFIVTAGNHAVGVLACASPGSAR CCEEEEEEECCCCCCCCEEEEECCCCCCCCEEEECCCEEEEECCCCEEEEEEECCCCCHH ACVSSLDEESTADTGSNENNAKAKLDMAKGEITTHGTESYAAYANGTVVKAGSKLDYTNA HHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCEEEECCCEEEECCCEEEECCC SVTLTDVDITTHGDNAHAIAARQGTVSFNQGEIHTTGPDAAIAKIYNGGKVTLKNTSAVA EEEEEEEEEEECCCCCEEEEEECCEEEECCCEEEECCCCCEEEEEECCCEEEEECCHHHH HQGAGIVLESSINGQEATVDILSGSSLRSANEILYNKNETSNVTITDSEVSSAADVFINN CCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHEECCCCCCEEEEECHHHCHHHHHEEEC IKGHLVIDASNSKITGSANLSTDDSTHTYLSLSDNSTWDIKTDSTVSKLTVDNSTVYISR CCEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCEEEEEC ADGKAFEPTRLTITENYVGNNGVLHLRTELGDDNSATDKVVINGNTSGTTRVKVTNAGGS CCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEECCCC GAYTLNGIEIISVEGESNGEFIKDSRIFAGAYEYSLTRGNTEATNKNWYLTNFQATSGGE CEEEECCEEEEEEECCCCCCEEECCEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCC TNSGGSSAPTVAPTPVLRSEAGSYVANLAAANTLFVMRLNDRAGETRYIDPVTEQERSSR CCCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCEEEEEEECCCCCCEEEECCCCHHHHHHH LWLRQIGGHNAWRDSNGQLRTTSHRYVSQLGAELLTGGFTDSDSWRLGVMAGYARDYNST HHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCC HSSVSDYRSKGSVRGYSAGLYATWFADDISKKGAYIDAWAQYSWFKNSVKGDELAYESYS HHHHHHHHHCCCCCCEECCEEEEEEHHHHHCCCCEEEEEHHHHHHHCCCCCCCEEEECCC AKGATVSLEAGYGFALNKSFGLEAAKYTWIFQPQAQAIWMGVDHNAHTEANGSRIENDAN CCCCEEEEECCCCEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC NNFQTRLGFRTFIRTQEKNSGPHGDDFEPFVEMNWIHNSKDFAVSMNGVKVEQDGARNLG CCEEEEECEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCEEEECCCCCCCC EIKLGVNGNLNPSASVWGNVGVQLGDNGYNDTAMMVGLKYKF EEEEECCCCCCCCCEECEEEEEEECCCCCCCEEEEEEEEECC >Mature Secondary Structure MKLKKLPGFSLGLIALAVGNAYAEQFIQYDEYKHAVAIKDGEVKDIDNALVITTGNGSYG CCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEECCCCEE VSVAGEGSNLTINKGVIVTTGGLYPSGNSPLSTVYTASAVVSEYGGAVILQGNNTIVTTG EEEECCCCEEEEECCEEEEECCCCCCCCCCCHHEEEHHHHHHHCCCEEEEECCCEEEEEC DYSIGLLSQTNGNLNTDTIIRVNTDGSVNPHLSYEGNTFIVTAGNHAVGVLACASPGSAR CCEEEEEEECCCCCCCCEEEEECCCCCCCCEEEECCCEEEEECCCCEEEEEEECCCCCHH ACVSSLDEESTADTGSNENNAKAKLDMAKGEITTHGTESYAAYANGTVVKAGSKLDYTNA HHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCEEEECCCEEEECCCEEEECCC SVTLTDVDITTHGDNAHAIAARQGTVSFNQGEIHTTGPDAAIAKIYNGGKVTLKNTSAVA EEEEEEEEEEECCCCCEEEEEECCEEEECCCEEEECCCCCEEEEEECCCEEEEECCHHHH HQGAGIVLESSINGQEATVDILSGSSLRSANEILYNKNETSNVTITDSEVSSAADVFINN CCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHEECCCCCCEEEEECHHHCHHHHHEEEC IKGHLVIDASNSKITGSANLSTDDSTHTYLSLSDNSTWDIKTDSTVSKLTVDNSTVYISR CCEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCEEEEEC ADGKAFEPTRLTITENYVGNNGVLHLRTELGDDNSATDKVVINGNTSGTTRVKVTNAGGS CCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEECCCC GAYTLNGIEIISVEGESNGEFIKDSRIFAGAYEYSLTRGNTEATNKNWYLTNFQATSGGE CEEEECCEEEEEEECCCCCCEEECCEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCC TNSGGSSAPTVAPTPVLRSEAGSYVANLAAANTLFVMRLNDRAGETRYIDPVTEQERSSR CCCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCEEEEEEECCCCCCEEEECCCCHHHHHHH LWLRQIGGHNAWRDSNGQLRTTSHRYVSQLGAELLTGGFTDSDSWRLGVMAGYARDYNST HHHHHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCC HSSVSDYRSKGSVRGYSAGLYATWFADDISKKGAYIDAWAQYSWFKNSVKGDELAYESYS HHHHHHHHHCCCCCCEECCEEEEEEHHHHHCCCCEEEEEHHHHHHHCCCCCCCEEEECCC AKGATVSLEAGYGFALNKSFGLEAAKYTWIFQPQAQAIWMGVDHNAHTEANGSRIENDAN CCCCEEEEECCCCEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC NNFQTRLGFRTFIRTQEKNSGPHGDDFEPFVEMNWIHNSKDFAVSMNGVKVEQDGARNLG CCEEEEECEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCEEEECCCCCCCC EIKLGVNGNLNPSASVWGNVGVQLGDNGYNDTAMMVGLKYKF EEEEECCCCCCCCCEECEEEEEEECCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA