Click here to switch to the map view.

The map label for this gene is ycjS

Identifier: 218700038

GI number: 218700038

Start: 1738448

End: 1739503

Strand: Direct

Name: ycjS

Synonym: ECIAI39_1667

Alternate gene names: 218700038

Gene position: 1738448-1739503 (Clockwise)

Preceding gene: 218700037

Following gene: 218700039

Centisome position: 33.87

GC content: 54.73

Gene sequence:

>1056_bases
GTGAAAAGTGCAATGACAAGCTCTCCGCTGCGGGTCGCGATCATAGGCGCGGGCCAGGTGGCGGATAAAGTTCATGCTTC
GTACTACTGCACCCGCAACGATCTGGAACTGGTGGCTGTCTGTGACAGCCGCCTTTCCCAGGCGCAGGCGCTGGCAGAAA
AATACGGGAATGCATCCGTGTGGGACGATCCGCAGGCCATGCTGCTGGCGGTGAAACCTGATGTGGTTAGCGTCTGCTCA
CCTAACCGTTTTCATTACGAACATACCCTGATGGCGCTGGAAGCGGGCTGCCATGTGATGTGCGAAAAACCGCCCGCCAT
GACGCCAGAACAGGCGCGGGAAATGTGCGATACCGCGCGCAAACAGGGCAAGGTGCTGGCCTACGACTTTCACCATCGTT
TTGCACTCGATACGCAACAGCTGCGTGAACAGGTGACCAACGGCGTTTTGGGAGAGATTTACGTTACCACCGCCCGCGCC
CTGCGTCGCTGCGGCGTTCCCGGCTGGGGCGTTTTTACCAATAAAGAATTGCAGGGCGGCGGGCCGCTTATTGACATCGG
CATTCATATGCTGGATGCGGCGATGTATGTACTGGGCTTTCCGGCGGTGAAAAGCGTGACCGCGCATAGCTTTCAAAAGA
TCGTCACACAAAAGAGCTGTGGTCAATTTGGCGAGTGGGACCCGGCAACCTACAGCGTCGAAGATTCGTTATTTGGCACC
ATTGAATTTCATAACGGCGGCATTCTGTGGCTGGAAACGTCATTTGCACTCAACATCCGCGAACAGTCGATTATGAACGT
CAGCTTTTGTGGTGATAAAGCTGGTGCAACGCTGTTTCCAGCACATATCTACACCGATAACAACGGTGAATTGATGACGC
TGATGCAACGGGAAATGGCAGACGACAATCGCCATTTGCGCAGCATGGAAGCCTTTATTAATCACGTACAGGGCAAGCCC
GTGATGATAGCCGACGCCGAGCAGGGGTACATCATCCAGCAACTGGTGGCGGCGTTGTATCAATCCGCAGAAACAGGGAC
GCGTGTGGAATTATGA

Upstream 100 bases:

>100_bases
TCAGGGCTATGTGGTGTACGAAGGGCGTATCCGGGCAGAAGATCCTGCCCAGGCGTACCGTGATTCTTTGGCCTGGTTGC
GTACCTGCTAAGAGGTCTTT

Downstream 100 bases:

>100_bases
CCAGGCCAGTAACGTTAACGGAACCCCATTTCAGCCAGCATACCCTGAACAAGTATGCTTCGCTGATGGCGCAGGGGAAC
GGCTATCTTGGGCTTCGCGC

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MKSAMTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASVWDDPQAMLLAVKPDVVSVCS
PNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTARKQGKVLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARA
LRRCGVPGWGVFTNKELQGGGPLIDIGIHMLDAAMYVLGFPAVKSVTAHSFQKIVTQKSCGQFGEWDPATYSVEDSLFGT
IEFHNGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREMADDNRHLRSMEAFINHVQGKP
VMIADAEQGYIIQQLVAALYQSAETGTRVEL

Sequences:

>Translated_351_residues
MKSAMTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASVWDDPQAMLLAVKPDVVSVCS
PNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTARKQGKVLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARA
LRRCGVPGWGVFTNKELQGGGPLIDIGIHMLDAAMYVLGFPAVKSVTAHSFQKIVTQKSCGQFGEWDPATYSVEDSLFGT
IEFHNGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREMADDNRHLRSMEAFINHVQGKP
VMIADAEQGYIIQQLVAALYQSAETGTRVEL
>Mature_351_residues
MKSAMTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASVWDDPQAMLLAVKPDVVSVCS
PNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTARKQGKVLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARA
LRRCGVPGWGVFTNKELQGGGPLIDIGIHMLDAAMYVLGFPAVKSVTAHSFQKIVTQKSCGQFGEWDPATYSVEDSLFGT
IEFHNGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREMADDNRHLRSMEAFINHVQGKP
VMIADAEQGYIIQQLVAALYQSAETGTRVEL

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI1787574, Length=351, Percent_Identity=98.8603988603989, Blast_Score=730, Evalue=0.0,
Organism=Escherichia coli, GI87081947, Length=210, Percent_Identity=27.1428571428571, Blast_Score=79, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24581117, Length=193, Percent_Identity=27.979274611399, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24581115, Length=158, Percent_Identity=32.2784810126582, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38715; Mature: 38715

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSAMTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASV
CCCCCCCCCEEEEEEECCHHHHHHHHEEEEECCCCEEEEEHHHHHHHHHHHHHHCCCCCC
WDDPQAMLLAVKPDVVSVCSPNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTAR
CCCCCEEEEEECCCEEECCCCCCEEHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH
KQGKVLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARALRRCGVPGWGVFTNKELQGG
HCCCEEEEECCCCEECCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCC
GPLIDIGIHMLDAAMYVLGFPAVKSVTAHSFQKIVTQKSCGQFGEWDPATYSVEDSLFGT
CCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEE
IEFHNGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREMA
EEEECCCEEEEEECEEEEECHHHEEEEEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHC
DDNRHLRSMEAFINHVQGKPVMIADAEQGYIIQQLVAALYQSAETGTRVEL
CCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEECC
>Mature Secondary Structure
MKSAMTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASV
CCCCCCCCCEEEEEEECCHHHHHHHHEEEEECCCCEEEEEHHHHHHHHHHHHHHCCCCCC
WDDPQAMLLAVKPDVVSVCSPNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTAR
CCCCCEEEEEECCCEEECCCCCCEEHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH
KQGKVLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARALRRCGVPGWGVFTNKELQGG
HCCCEEEEECCCCEECCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCC
GPLIDIGIHMLDAAMYVLGFPAVKSVTAHSFQKIVTQKSCGQFGEWDPATYSVEDSLFGT
CCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEE
IEFHNGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREMA
EEEECCCEEEEEECEEEEECHHHEEEEEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHC
DDNRHLRSMEAFINHVQGKPVMIADAEQGYIIQQLVAALYQSAETGTRVEL
CCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]