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The map label for this gene is ydiU

Identifier: 218699726

GI number: 218699726

Start: 1411916

End: 1413352

Strand: Direct

Name: ydiU

Synonym: ECIAI39_1347

Alternate gene names: 218699726

Gene position: 1411916-1413352 (Clockwise)

Preceding gene: 218699725

Following gene: 218699730

Centisome position: 27.51

GC content: 52.61

Gene sequence:

>1437_bases
ATGACCCTGTCTTTTATTACCCGCTGGTGCGATGAATTGCCAGAAACCTATACAGCACTTTCCCCTACGCCTTTAAATAA
GGCCCGGCTGATTTGGCATAATGCCGAACTGGCTAACACGCTGAGTATTCCATCGTCGCTGTTTAAAAATGGCGCAGGTG
TCTGGGGCGGCGAAACCCTACTGCCTGGTATGTCACCACTGGCGCAGGTTTACAGTGGTCATCAGTTCGGCGTCTGGGCG
GGCCAACTGGGTGATGGGCGCGGCATTTTACTCGGCGAACAACAGCTGGCCGATGGCACTACAATGGACTGGCATCTGAA
AGGTGCTGGCCTGACGCCTTATTCGCGAATGGGTGATGGACGGGCGGTTTTACGTTCGACGATACGAGAAAGTCTCGCCA
GTGAGGCGATGCATTATCTGGGCATTCCGACGACCCGCGCGTTAAGTATCGTCACCAGCGATTCGCCAGTGTATCGGGAA
ACGGTGGAGCCAGGCGCGATGCTGATGCGTGTGGCACCAAGTCATCTGCGCTTTGGTCATTTCGAACATTTTTACTATCG
CCGCGAGCCGGAAAAGGTTCGTCAGTTGGCTGACTTTGCCATTCGTCATTACTGGTCACATCTTGCAGATGATGAGGACA
AATACCGTCTCTGGTTTAGCGATGTTGTCGCACGTACCGCATCGTTAATTGCCCAATGGCAGACGGTCGGCTTTGCTCAT
GGGGTGATGAATACCGACAACATGTCGCTGCTGGGGCTGACGCTTGATTACGGGCCGTTTGGTTTTCTTGATGATTACGA
ACCCGGTTTTATTTGTAATCACTCGGATCATCAAGGGCGTTATAGCTTTGATAATCAACCTGCTGTCGCGTTGTGGAATT
TACAGCGTCTGGCGCAGACATTGTCACCATTTGTTGCCGTAGATGCCCTGAATGAGGCCCTGGACAGCTATCAGCAGGTT
TTGTTGACGCATTATGGACAACGGATGCGGCAGAAACTGGGCTTCATGACGGAGCAAAAAGAGGATAACGCGCTACTGAA
TGAATTATTCAGTCTGATGGCGCGAGAGCGCAGCGATTATACCCGCACATTCCGCATGCTGAGTCTGACCGAGCAGCACA
GCGCGGCGTCACCGCTACGTGATGAGTTTATTGATCGTGCGGCATTTGATGACTGGTTTGCCCGTTATCGGAGGCGTTTG
CAACAAGACGAGGTTAGCGATAGTGAGCGTCAGCAACTGATGCAAAGCGTTAACCCAGCTCTGGTGTTGCGCAACTGGTT
GGCGCAACGGGCGATTGAAGCGGCAGAAAAGGGTGATATGACGGAATTGCACCGCCTGCATGAGGCGTTGCGAAATCCTT
TCAGCGACAGAGATGATGACTATGTCAGTCGTCCACCTGACTGGGGTAAACGGCTGGAAGTCAGCTGCTCGAGTTAA

Upstream 100 bases:

>100_bases
TTCCTGTAAATCAGATAACGACGTTGGTTCAGCGATAACCCTCCTGTTTGCTGGTGTTTAAGACGAGAGTAACCGTCTAC
ACTATCAAACAGGAGGATCT

Downstream 100 bases:

>100_bases
AGGCTACTTGGTCAACAGCAGCTTGCCAGCCTGAGTTTTACGGAGCAGATATTCTTGCCCGTCATGATCGATAATCAGTT
TGCCATCCGGACCTAACAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MTLSFITRWCDELPETYTALSPTPLNKARLIWHNAELANTLSIPSSLFKNGAGVWGGETLLPGMSPLAQVYSGHQFGVWA
GQLGDGRGILLGEQQLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
TVEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAIRHYWSHLADDEDKYRLWFSDVVARTASLIAQWQTVGFAH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQV
LLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRRRL
QQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS

Sequences:

>Translated_478_residues
MTLSFITRWCDELPETYTALSPTPLNKARLIWHNAELANTLSIPSSLFKNGAGVWGGETLLPGMSPLAQVYSGHQFGVWA
GQLGDGRGILLGEQQLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
TVEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAIRHYWSHLADDEDKYRLWFSDVVARTASLIAQWQTVGFAH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQV
LLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRRRL
QQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS
>Mature_477_residues
TLSFITRWCDELPETYTALSPTPLNKARLIWHNAELANTLSIPSSLFKNGAGVWGGETLLPGMSPLAQVYSGHQFGVWAG
QLGDGRGILLGEQQLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRET
VEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAIRHYWSHLADDEDKYRLWFSDVVARTASLIAQWQTVGFAHG
VMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQVL
LTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRRRLQ
QDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=383, Percent_Identity=43.0809399477807, Blast_Score=294, Evalue=1e-79,
Organism=Escherichia coli, GI1787999, Length=478, Percent_Identity=97.907949790795, Blast_Score=968, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6325034, Length=344, Percent_Identity=36.9186046511628, Blast_Score=219, Evalue=7e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 54509; Mature: 54378

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSFITRWCDELPETYTALSPTPLNKARLIWHNAELANTLSIPSSLFKNGAGVWGGETL
CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHCCHHHHHCCCCCCCCCHH
LPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQQLADGTTMDWHLKGAGLTPYSRMGDG
CCCCHHHHHHHCCCCCCEEECCCCCCCEEEECCHHHCCCCCEEEEECCCCCCCHHHCCCH
RAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETVEPGAMLMRVAPSHLRFGH
HHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHCCCHHHHHHHCHHHHCCCC
FEHFYYRREPEKVRQLADFAIRHYWSHLADDEDKYRLWFSDVVARTASLIAQWQTVGFAH
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQT
CCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
LSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
TRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRRRLQQDEVSDSERQQLMQSVNPA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHH
LVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure 
TLSFITRWCDELPETYTALSPTPLNKARLIWHNAELANTLSIPSSLFKNGAGVWGGETL
CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHCCHHHHHCCCCCCCCCHH
LPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQQLADGTTMDWHLKGAGLTPYSRMGDG
CCCCHHHHHHHCCCCCCEEECCCCCCCEEEECCHHHCCCCCEEEEECCCCCCCHHHCCCH
RAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETVEPGAMLMRVAPSHLRFGH
HHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHCCCHHHHHHHCHHHHCCCC
FEHFYYRREPEKVRQLADFAIRHYWSHLADDEDKYRLWFSDVVARTASLIAQWQTVGFAH
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQT
CCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
LSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
TRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRRRLQQDEVSDSERQQLMQSVNPA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHH
LVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRDDDYVSRPPDWGKRLEVSCSS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA