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The map label for this gene is ynjC

Identifier: 218699678

GI number: 218699678

Start: 1364776

End: 1366266

Strand: Reverse

Name: ynjC

Synonym: ECIAI39_1299

Alternate gene names: 218699678

Gene position: 1366266-1364776 (Counterclockwise)

Preceding gene: 218699679

Following gene: 218699677

Centisome position: 26.62

GC content: 56.67

Gene sequence:

>1491_bases
ATGATAGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCTCACGCTGATATCGCCTGCTTTGTCGTTGACGCACTGGCA
GGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTAGCGACGCTGGTGTCGACAACCATTGCGGCGGTCGGGGCGT
TGTTGATTGCCCTGCTGGTGATTGTGGCGCTGTGGCCAGGGCCGAAATGGCAGCGTATGTGCGCCCGTCTGCCGTGGCTG
CTCGCCATTCCCCATGTGGCTTTTGCCTCCAGCGCCCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCC
ATATTTCACTCCGCCAATGGACAAATTGGGTATTGGGCTGGGCCTCACCCTGGCGGTGAAAGAAAGCGCATTTCTGCTGT
GGATCTTAGCGGCAGTATTGAGCGAAAAACGGCTGTTGCAGCAACTCATTGTGCTGGATTCGCTGGGCTACAGCCGCTGG
CAATGTTTGAAGTGGCTGCTGTTGCCCTCCGTCGCGTCTGCGTTAGCAATGGCGATGCTGGCGATTGTCGCCTGGTCGCT
GTCGGTCGTGGATGTGGCGATTATTCTTGGGCCAGGTAATCCCCCGACGCTGGCGGTAATTAGCTGGCAGTGGTTAACTC
AGGGCGACGCCGATCAACAAACGAAAGGTGCACTCGCCAGCCTGCTGCTGATGCTGTTACTCGCCGCCTACGTTTTGCTG
GGCTATCTGCTATGGCGTGGCTGGCGACGTACTATTCCCCGCGTAGATGGCGTTCGTAAGCCTGCCACGCCTTTATTGCC
AGGCAATACGCTGGCGAGTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATCAGTCGA
CGATCAATAGTGAAGCGCTCATCAACAGCCTGACAATGGGGCTGGTGGCGGCATTCATCGCTTTGCTCCTGTTACTGCTG
TGGCTGGAATGGGGGCCACAGCGTCGCCAGTTGTGGCTATGGTTGCCCATTTTATTAACCGCTCTGCCGCTGGTGGCGGG
CCAGTACACGCTGGCGCTATGGCTGAACCTGGATGGAACCTGGACGGCGGTGGTCTGGGGGCATCTGCTATGGGTAATGC
CGTGGATGCTGTTTATCCTGCAACCCGCCTGGCAGCGCATTGATTCACGGTTAATTTTGATTGCGCAAACACTGGGCTGG
TCGCGGGCCAAAATCTTCTTTTACGTAAAATGCCCACTCATGTTGCGCCCTGCGCTGATTGCCTTCGCGGTGGGATTTTC
AGTCAGTATTGCGCAGTATATGCCGACGCTGTGGCTGGGCGCGGGGCGTTTTCCGACGCTCACCACTGAAGCGGTGGCAT
TAAGCAGCGGCGGCAGCAACGGTATTCTCGCCGCCCAGGCTTTATGGCAACTGCTGTTACCGCTTATTATTTTTGCCCTG
ACCGCGTTAGTCGCAAAATGGGTAGGTTATGTCAGACAAGGACTCCGCTAA

Upstream 100 bases:

>100_bases
TGCCGCCGGTACTGGCTGAACCGCACGCAGGTTGGGTAAATGCGCTGGAACAAGAATGGCTACACCGTTACGGTACGCAT
TAATCTTTTTGCTGTGGGCG

Downstream 100 bases:

>100_bases
TGCTCTGCGTGAAAAATGTTTCGCTACGTTTACCAGAAAGCCGCTTGCTGACAAACGTTAACTTTACAGTAGATAAAGGT
GACATTGTCACGTTAATGGG

Product: ABC transporter membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MIAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWL
LAIPHVAFASSALLLFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRW
QCLKWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
GYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVAAFIALLLLLL
WLEWGPQRRQLWLWLPILLTALPLVAGQYTLALWLNLDGTWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGW
SRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
TALVAKWVGYVRQGLR

Sequences:

>Translated_496_residues
MIAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWL
LAIPHVAFASSALLLFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRW
QCLKWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
GYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVAAFIALLLLLL
WLEWGPQRRQLWLWLPILLTALPLVAGQYTLALWLNLDGTWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGW
SRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
TALVAKWVGYVRQGLR
>Mature_496_residues
MIAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWL
LAIPHVAFASSALLLFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRW
QCLKWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
GYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVAAFIALLLLLL
WLEWGPQRRQLWLWLPILLTALPLVAGQYTLALWLNLDGTWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGW
SRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
TALVAKWVGYVRQGLR

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=496, Percent_Identity=96.1693548387097, Blast_Score=819, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 54272; Mature: 54272

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLV
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVALWPGPKWQRMCARLPWLLAIPHVAFASSALLLFADGGLLYDYFPYFTPPMDKLGIGL
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCHHHCCCCCCCCHHHHCCCC
GLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRWQCLKWLLLPSVASALAMAML
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
HHHHHHHHHHEEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINSEAL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
INSLTMGLVAAFIALLLLLLWLEWGPQRRQLWLWLPILLTALPLVAGQYTLALWLNLDGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHHHHHHHCCCEEEEEEEECCCC
WTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCEEEEEEEECHHHHHHHHH
AFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
TALVAKWVGYVRQGLR
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLV
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVALWPGPKWQRMCARLPWLLAIPHVAFASSALLLFADGGLLYDYFPYFTPPMDKLGIGL
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCHHHCCCCCCCCHHHHCCCC
GLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRWQCLKWLLLPSVASALAMAML
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
HHHHHHHHHHEEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINSEAL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
INSLTMGLVAAFIALLLLLLWLEWGPQRRQLWLWLPILLTALPLVAGQYTLALWLNLDGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHHHHHHHCCCEEEEEEEECCCC
WTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCEEEEEEEECHHHHHHHHH
AFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
TALVAKWVGYVRQGLR
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]