| Definition | Escherichia coli IAI39 chromosome, complete genome. |
|---|---|
| Accession | NC_011750 |
| Length | 5,132,068 |
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The map label for this gene is ynjD
Identifier: 218699677
GI number: 218699677
Start: 1364123
End: 1364776
Strand: Reverse
Name: ynjD
Synonym: ECIAI39_1298
Alternate gene names: 218699677
Gene position: 1364776-1364123 (Counterclockwise)
Preceding gene: 218699678
Following gene: 218699676
Centisome position: 26.59
GC content: 51.53
Gene sequence:
>654_bases ATGCTCTGCGTGAAAAATGTTTCGCTACGTTTACCAGAAAGCCGCTTGCTGACAAACGTTAACTTTACAGTAGATAAAGG TGACATTGTCACGTTAATGGGACCATCCGGCTGCGGGAAATCCACTCTGTTTTCGTGGATGATTGGTGCGCTGGCCGGAC AGTTTTCTTGTACAGGGGAGCTATGGCTTAATGAGCAACGGATTGACATGCTACCCACCGCACAGCGTCAGATTGGCATT CTTTTCCAGGATGCACTGTTATTTGACCAGTTCAGCGTCGGGCAAAATTTACTGCTGGCGCTACCGGCGACACTTAAGGG GAATGCCCGACGTAATGCCGTGAATGATGCACTTGAGCGTTCAGGCCTTGACGGAGCTTTCCATCAGGATCCTGCCACTT TGTCTGGCGGTCAGCTAGCGCGCGTTGCTCTGCTTCGCGCTCTTCTCGCTCAGCCAAAAGCGTTGCTACTGGATGAGCCA TTCAGCCGTCTTGATGTAGCTCTGCGCGATAATTTTCGCCAGTGGGTGTTCAGCGAAGTTCGCGCCCAGGCGATCCCCGT CGTTCAGGTAACGCACGATCTCCAGGATGTTCCTGCTGATAGTTCTGTTCTGGATATGGCGCAGTGGTCAGAAAATTACA ACAAACTGCGATAA
Upstream 100 bases:
>100_bases CCGCCCAGGCTTTATGGCAACTGCTGTTACCGCTTATTATTTTTGCCCTGACCGCGTTAGTCGCAAAATGGGTAGGTTAT GTCAGACAAGGACTCCGCTA
Downstream 100 bases:
>100_bases CGCAAAGTTTTTCTCAATGCGTCAGTTCAGAATGGCGCACTCAAAACTACAATGTCGGGATTTTCGATGAAACGTGTTTC TCAAATGACCGCGCTGGCAA
Product: putative sulfate/thiosulfate ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLDGAFHQDPATLSGGQLARVALLRALLAQPKALLLDEP FSRLDVALRDNFRQWVFSEVRAQAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
Sequences:
>Translated_217_residues MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLDGAFHQDPATLSGGQLARVALLRALLAQPKALLLDEP FSRLDVALRDNFRQWVFSEVRAQAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR >Mature_217_residues MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLDGAFHQDPATLSGGQLARVALLRALLAQPKALLLDEP FSRLDVALRDNFRQWVFSEVRAQAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]
COG id: COG4136
COG function: function code R; ABC-type uncharacterized transport system, ATPase component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=169, Percent_Identity=33.1360946745562, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI27262624, Length=190, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI27262626, Length=190, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI27881501, Length=182, Percent_Identity=28.021978021978, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI30795238, Length=182, Percent_Identity=28.021978021978, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=97.6958525345622, Blast_Score=428, Evalue=1e-121, Organism=Escherichia coli, GI1790467, Length=191, Percent_Identity=35.0785340314136, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1786253, Length=177, Percent_Identity=37.8531073446328, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI87081709, Length=196, Percent_Identity=35.2040816326531, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1788761, Length=200, Percent_Identity=32.5, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI87081791, Length=197, Percent_Identity=33.502538071066, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI87082267, Length=184, Percent_Identity=32.6086956521739, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1787029, Length=223, Percent_Identity=30.9417040358744, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1786563, Length=181, Percent_Identity=34.8066298342541, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=34.010152284264, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1787370, Length=184, Percent_Identity=32.0652173913043, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787712, Length=192, Percent_Identity=32.8125, Blast_Score=95, Evalue=3e-21, Organism=Escherichia coli, GI1786872, Length=200, Percent_Identity=36.5, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789593, Length=201, Percent_Identity=30.3482587064677, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1786698, Length=210, Percent_Identity=32.3809523809524, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=32.3383084577114, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1789873, Length=184, Percent_Identity=34.2391304347826, Blast_Score=88, Evalue=4e-19, Organism=Escherichia coli, GI1789672, Length=171, Percent_Identity=35.0877192982456, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790544, Length=182, Percent_Identity=32.967032967033, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1788225, Length=229, Percent_Identity=29.6943231441048, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=32.3383084577114, Blast_Score=80, Evalue=8e-17, Organism=Escherichia coli, GI1789032, Length=184, Percent_Identity=29.8913043478261, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788897, Length=208, Percent_Identity=29.3269230769231, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI1787112, Length=213, Percent_Identity=30.9859154929577, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48994943, Length=207, Percent_Identity=28.0193236714976, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788506, Length=192, Percent_Identity=31.7708333333333, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790162, Length=207, Percent_Identity=29.951690821256, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1786398, Length=185, Percent_Identity=34.0540540540541, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789891, Length=190, Percent_Identity=32.6315789473684, Blast_Score=74, Evalue=5e-15, Organism=Escherichia coli, GI1790739, Length=203, Percent_Identity=31.5270935960591, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1789962, Length=194, Percent_Identity=31.9587628865979, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787089, Length=190, Percent_Identity=31.5789473684211, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=33.6683417085427, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789864, Length=216, Percent_Identity=26.8518518518519, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789586, Length=201, Percent_Identity=30.3482587064677, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787105, Length=220, Percent_Identity=27.7272727272727, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787500, Length=190, Percent_Identity=26.8421052631579, Blast_Score=70, Evalue=8e-14, Organism=Escherichia coli, GI1786319, Length=187, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI145693107, Length=216, Percent_Identity=30.5555555555556, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789963, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=28.3720930232558, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI87081782, Length=176, Percent_Identity=31.8181818181818, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1788165, Length=205, Percent_Identity=30.2439024390244, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI48995001, Length=209, Percent_Identity=30.622009569378, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI48994883, Length=191, Percent_Identity=29.3193717277487, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787792, Length=195, Percent_Identity=31.2820512820513, Blast_Score=67, Evalue=6e-13, Organism=Escherichia coli, GI48994997, Length=206, Percent_Identity=29.126213592233, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1786653, Length=203, Percent_Identity=29.064039408867, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790525, Length=192, Percent_Identity=27.6041666666667, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787758, Length=186, Percent_Identity=26.8817204301075, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786345, Length=201, Percent_Identity=30.3482587064677, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI1786803, Length=184, Percent_Identity=27.7173913043478, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71996809, Length=165, Percent_Identity=35.7575757575758, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI193211017, Length=165, Percent_Identity=35.7575757575758, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193211015, Length=165, Percent_Identity=35.7575757575758, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17541710, Length=166, Percent_Identity=36.144578313253, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17567269, Length=173, Percent_Identity=33.5260115606936, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71984940, Length=161, Percent_Identity=34.1614906832298, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17567265, Length=174, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115535101, Length=174, Percent_Identity=34.4827586206897, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI212646699, Length=180, Percent_Identity=32.2222222222222, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25146777, Length=164, Percent_Identity=33.5365853658537, Blast_Score=67, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17569145, Length=169, Percent_Identity=30.1775147928994, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193202349, Length=173, Percent_Identity=31.7919075144509, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=220, Percent_Identity=26.8181818181818, Blast_Score=71, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323217, Length=175, Percent_Identity=32.5714285714286, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=233, Percent_Identity=27.4678111587983, Blast_Score=62, Evalue=6e-11, Organism=Drosophila melanogaster, GI24659289, Length=178, Percent_Identity=33.7078651685393, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI19920532, Length=167, Percent_Identity=32.9341317365269, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI24580930, Length=167, Percent_Identity=32.9341317365269, Blast_Score=74, Evalue=5e-14, Organism=Drosophila melanogaster, GI281363262, Length=162, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24653245, Length=194, Percent_Identity=30.4123711340206, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI45552437, Length=187, Percent_Identity=33.1550802139037, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24585557, Length=187, Percent_Identity=33.1550802139037, Blast_Score=70, Evalue=7e-13, Organism=Drosophila melanogaster, GI85725262, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI85726357, Length=164, Percent_Identity=31.7073170731707, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI17647959, Length=161, Percent_Identity=31.6770186335404, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 23921; Mature: 23921
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE CEEECCCCEECCHHHHEEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH SGLDGAFHQDPATLSGGQLARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH RAQAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR HHHHCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE CEEECCCCEECCHHHHEEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH SGLDGAFHQDPATLSGGQLARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH RAQAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR HHHHCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]