Click here to switch to the map view.

The map label for this gene is ppdB

Identifier: 218696421

GI number: 218696421

Start: 3180303

End: 3180866

Strand: Reverse

Name: ppdB

Synonym: EC55989_3101

Alternate gene names: 218696421

Gene position: 3180866-3180303 (Counterclockwise)

Preceding gene: 218696422

Following gene: 218696420

Centisome position: 61.71

GC content: 51.95

Gene sequence:

>564_bases
ATGCCTGTAAAAGAGCAAGGTTTTTCTCTGCTGGAAGTGTTGATTGCTATGGCGATCAGTAGCGTATTGTTGCTGGGGGC
TGCACGCTTTCTGCCTGCGTTACAGCGTGAAAGTTTAACGAGCACCCGTAAGCTGGCGCTGGAAGATGAAATCTGGCTGC
GGGTATTTACCGTCGCGAAGCATCTCCAGAGGGCGGGTTATTGTCATGGCAGCTGTACCGGCGAAGGGCTGGAAATTGTC
GGACAGGATGACTGTATCATTGTGCAGTGGGATGCGAACAGTAACGGTATCTGGGATCGCGAACCGGTAAAAGAGTCTGA
CCAGATTGGATTTCGTCTGAAGGAGCATGTGCTGGAAACGCTACGCGGTGCGACATCCTGTGAAGGTAAGGGCTGGGATA
AAGTCACTAATCCGGATGCCATCATTATCGACACTTTTCAGGTCGTACGTCAGGATGTCAGCGGCTTCTCGCCGGTGTTG
ACGGTTAATATGCGTGCTGCCAGTAAGTCTGAACCGCAAACCGTGGTGGATGCCAGCTATAGCGTGACAGGATTCAACCT
GTGA

Upstream 100 bases:

>100_bases
GGGCCGGGCATATTCGCTTCAAAAACTCAACGGGCGAGTGGTGGCTGGTGGTTTCGCCGTGGGGAAGACTCCGGCTTTGT
CAGCAAGGAGAAACAGAAGG

Downstream 100 bases:

>100_bases
ACCGCGAAAAAGGTGTTTCGTCACTGGCTCTGGTTCTGATGCTGCTGGTTTTGGGTAGCTTGCTATTGCAAGGAATGAGT
CAGCAGGATCGCAGTTTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAKHLQRAGYCHGSCTGEGLEIV
GQDDCIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL
TVNMRAASKSEPQTVVDASYSVTGFNL

Sequences:

>Translated_187_residues
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAKHLQRAGYCHGSCTGEGLEIV
GQDDCIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL
TVNMRAASKSEPQTVVDASYSVTGFNL
>Mature_186_residues
PVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAKHLQRAGYCHGSCTGEGLEIVG
QDDCIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLT
VNMRAASKSEPQTVVDASYSVTGFNL

Specific function: Not yet known [H]

COG id: COG4795

COG function: function code U; Type II secretory pathway, component PulJ

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789189, Length=187, Percent_Identity=97.8609625668449, Blast_Score=378, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR016419
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 20567; Mature: 20435

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HLQRAGYCHGSCTGEGLEIVGQDDCIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLET
HHHHCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVDASY
HCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCC
SVTGFNL
EEEECCC
>Mature Secondary Structure 
PVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HLQRAGYCHGSCTGEGLEIVGQDDCIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLET
HHHHCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVDASY
HCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCC
SVTGFNL
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814 [H]