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The map label for this gene is ygdB

Identifier: 218696420

GI number: 218696420

Start: 3179899

End: 3180306

Strand: Reverse

Name: ygdB

Synonym: EC55989_3100

Alternate gene names: 218696420

Gene position: 3180306-3179899 (Counterclockwise)

Preceding gene: 218696421

Following gene: 218696419

Centisome position: 61.7

GC content: 53.92

Gene sequence:

>408_bases
GTGAACCGCGAAAAAGGTGTTTCGTCACTGGCTCTGGTTCTGATGCTGCTGGTTTTGGGTAGCTTGCTATTGCAAGGAAT
GAGTCAGCAGGATCGCAGTTTTGCCTCTCGCGTGAGCATGGAAAGTCAGTCATTGCGCCGCCAGGCCATCGTTCAGTCGG
CGCTGGCGTGGGGGAAAATGCACTCCTGGCAGACGCAGCCCGCAGTTCAGTGCTCGCAGTACGCTGGAACCGATGCCCGG
GTTTGTTTGCGTTTACTGGCAGATAATGAAGCCTTATTGGTTGCCGGTTATGAAGGCGTTTCGTTGTGGCGAACAGGCGA
AGTCATTGATGGAAACATTGTTTTTTCGCCACGCGGCTGGAGCGATTTTTGTCCGCTGAAAGAGAGGGCGTTATGTCAGC
TTCCCTGA

Upstream 100 bases:

>100_bases
GCGGCTTCTCGCCGGTGTTGACGGTTAATATGCGTGCTGCCAGTAAGTCTGAACCGCAAACCGTGGTGGATGCCAGCTAT
AGCGTGACAGGATTCAACCT

Downstream 100 bases:

>100_bases
AGAATCAACAAGGCTTTAGCCTGCCGGAGGTAATGGTTGCGATGGTGCTGATGGTGATGATTGTCACTGCGTTATCGGGT
ATCCAGCAAACATTAATGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKMHSWQTQPAVQCSQYAGTDAR
VCLRLLADNEALLVAGYEGVSLWRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP

Sequences:

>Translated_135_residues
MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKMHSWQTQPAVQCSQYAGTDAR
VCLRLLADNEALLVAGYEGVSLWRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP
>Mature_135_residues
MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKMHSWQTQPAVQCSQYAGTDAR
VCLRLLADNEALLVAGYEGVSLWRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082164, Length=135, Percent_Identity=97.037037037037, Blast_Score=233, Evalue=4e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019652 [H]

Pfam domain/function: PF10713 DUF2509 [H]

EC number: NA

Molecular weight: Translated: 14899; Mature: 14899

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSWQTQPAVQCSQYAGTDARVCLRLLADNEALLVAGYEGVSLWRTGEVIDGNIVFSPRGW
CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCEEEECCCEECCEEEECCCCC
SDFCPLKERALCQLP
CCCCCCCHHHHCCCC
>Mature Secondary Structure
MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSWQTQPAVQCSQYAGTDARVCLRLLADNEALLVAGYEGVSLWRTGEVIDGNIVFSPRGW
CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCEEEECCCEECCEEEECCCCC
SDFCPLKERALCQLP
CCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503 [H]