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The map label for this gene is ydiU

Identifier: 218695268

GI number: 218695268

Start: 1938440

End: 1939876

Strand: Reverse

Name: ydiU

Synonym: EC55989_1874

Alternate gene names: 218695268

Gene position: 1939876-1938440 (Counterclockwise)

Preceding gene: 218695269

Following gene: 218695264

Centisome position: 37.63

GC content: 52.12

Gene sequence:

>1437_bases
ATGACCCTGTCTTTTATTACCCGCTGGCGCGATGAATTGCCAGCAACCTATACAGCACTTTCCCCTACGCCTTTAAATAA
TGCCCGGCTGATTTGGCATAATACCGAACTCGCTAACACGCTGAGTATTCCATCGTCGCTGTTTAAAAATGGCGCAGGTG
TCTGGGGCGGCGAAACCCTACTGCCTGGTATGTCACCACTGGCGCAGGTTTACAGTGGTCATCAGTTCGGCGTCTGGGCG
GGCCAACTGGGTGATGGGCGAGGTATTTTACTCGGCGAACAACTGCTTGCTGATGGCACTACAATGGACTGGCATCTGAA
AGGTGCTGGCCTGACGCCTTATTCGCGAATGGGTGATGGACGGGCGGTTTTACGTTCGACGATACGAGAAAGTCTCGCCA
GTGAGGCGATGCATTATCTGGGCATTCCGACGACCCGCGCGTTAAGTATCGTCACCAGCGATTCGCCAGTGTATCGGGAA
ACGGTAGAGCCAGGTGCGATGCTGATGCGTGTGGCACCAAGTCATCTGCGCTTTGGTCATTTCGAACATTTTTACTATCG
CCGCGAGCCGGAAAAGGTTCGTCAGTTAGCTGACTTTGCCATTCGTCATTACTGGTCACATCTTGAAGATGATGAGGACA
AATACCGTCTCTGGTTTAACGATGTTGTCGCACGTACCGCATCGTTAATTGCCCAATGGCAGACGGTCGGCTTTGCTCAT
GGGGTGATGAATACCGACAACATGTCGCTGCTGGGGCTGACGCTTGATTACGGGCCGTTTGGTTTTCTTGATGATTACGA
ACCCGGTTTTATTTGTAATCACTCGGATCATCAAGGGCGTTACAGCTTTGATAATCAACCTGCCGTCGCGTTGTGGAATT
TACAGCGTCTGGCGCAGACATTGTCACCATTTGTTGCCGTAGATGCCCTGAATGAGGCCCTGGACAGCTATCAGCAGGTT
TTGTTGACGCATTATGGACAACGGATGCGGCAGAAACTGGGCTTCATGACGGAGCAAAAAGAGGATAACGCGCTACTGAA
TGAATTATTCAGTCTGATGGCGCGAGAGCGCAGCGATTATACCCGCACATTCCGCATGCTGAGTCTGACCGAGCAGCACA
GCGCGGCGTCACCGCTACGTGATGAGTTTATTGATCGTGCGGCATTTGATGACTGGTTTGCCCGTTATCGGAGGCGTTTG
CAACAAGACGAGGTTAGCGATATTGAGCGTCAGCAACTGATGCAAAGCGTTAACCCAGCTCTGGTGTTGCGCAACTGGTT
GGCGCAACGGGCGATTGAAGCGGCAGAAAAGGGTGATATGACGGAATTGCACCGCCTGCATGAGGCGTTGCGAAATCCTT
TCAGCGACAGAGCTGATGACTATGTCAGTCGTCCACCTGACTGGGGTAAACGGCTGGAAGTCAGCTGCTCGAGTTAA

Upstream 100 bases:

>100_bases
TTCCTATAAATCAGATAACGACGTTGGTTCAGCGATAACCCTCCTGTTTGCTGGTGTTTAAGACGAGAGTAACCGTCTAC
ACTATTAAACAGGAGGATCT

Downstream 100 bases:

>100_bases
AGGCTACTTGGTCAACAGCAGCTTGCCAGCCTGAGTTTTACGGAGCAGATATTCTTGCCCGTCATGATCGATAATCAGTT
TGCCATCCGGACCTAACAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MTLSFITRWRDELPATYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGETLLPGMSPLAQVYSGHQFGVWA
GQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
TVEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAIRHYWSHLEDDEDKYRLWFNDVVARTASLIAQWQTVGFAH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQV
LLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRRRL
QQDEVSDIERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRADDYVSRPPDWGKRLEVSCSS

Sequences:

>Translated_478_residues
MTLSFITRWRDELPATYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGETLLPGMSPLAQVYSGHQFGVWA
GQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
TVEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAIRHYWSHLEDDEDKYRLWFNDVVARTASLIAQWQTVGFAH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQV
LLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRRRL
QQDEVSDIERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRADDYVSRPPDWGKRLEVSCSS
>Mature_477_residues
TLSFITRWRDELPATYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGETLLPGMSPLAQVYSGHQFGVWAG
QLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRET
VEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAIRHYWSHLEDDEDKYRLWFNDVVARTASLIAQWQTVGFAHG
VMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQVL
LTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRRRLQ
QDEVSDIERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRADDYVSRPPDWGKRLEVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=384, Percent_Identity=43.2291666666667, Blast_Score=296, Evalue=2e-80,
Organism=Escherichia coli, GI1787999, Length=478, Percent_Identity=97.6987447698745, Blast_Score=966, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6325034, Length=360, Percent_Identity=36.1111111111111, Blast_Score=222, Evalue=1e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 54572; Mature: 54441

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSFITRWRDELPATYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGETL
CCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCHHHHHHHCCHHHHHCCCCCCCCCCC
LPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDG
CCCCHHHHHHHCCCCCCEEECCCCCCCEEEEHHHHHHCCCCEEEEECCCCCCCHHHCCCH
RAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETVEPGAMLMRVAPSHLRFGH
HHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHCCCHHHHHHHCHHHHCCCC
FEHFYYRREPEKVRQLADFAIRHYWSHLEDDEDKYRLWFNDVVARTASLIAQWQTVGFAH
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQT
CCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
LSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
TRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRRRLQQDEVSDIERQQLMQSVNPA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRADDYVSRPPDWGKRLEVSCSS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEECC
>Mature Secondary Structure 
TLSFITRWRDELPATYTALSPTPLNNARLIWHNTELANTLSIPSSLFKNGAGVWGGETL
CHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCHHHHHHHCCHHHHHCCCCCCCCCCC
LPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTMDWHLKGAGLTPYSRMGDG
CCCCHHHHHHHCCCCCCEEECCCCCCCEEEEHHHHHHCCCCEEEEECCCCCCCHHHCCCH
RAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRETVEPGAMLMRVAPSHLRFGH
HHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHHHHHCCCHHHHHHHCHHHHCCCC
FEHFYYRREPEKVRQLADFAIRHYWSHLEDDEDKYRLWFNDVVARTASLIAQWQTVGFAH
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSDHQGRYSFDNQPAVALWNLQRLAQT
CCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
LSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMARERSDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
TRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRRRLQQDEVSDIERQQLMQSVNPA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFSDRADDYVSRPPDWGKRLEVSCSS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA