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The map label for this gene is ykgF [H]

Identifier: 218692554

GI number: 218692554

Start: 4958464

End: 4959879

Strand: Reverse

Name: ykgF [H]

Synonym: ECED1_5016

Alternate gene names: 218692554

Gene position: 4959879-4958464 (Counterclockwise)

Preceding gene: 218692555

Following gene: 218692553

Centisome position: 95.21

GC content: 47.53

Gene sequence:

>1416_bases
ATGTCTTTGAAAACAAGTGATATCAGGTTTAAAGAGCGTATCCGTATTCAGATTCAGGACCCGATCATGCGAAAAGCTGT
GGCTAACGCACAGGAGCGCATAGGGACTAATCGACAGAAAATGGTTGATGAACTGGGACACTGGGAGGAATGGCGTTCAC
GAGCTGAACAGATTCGTCGGCATGTTCTGGAAAATCTTGATGCTTATTTGTATCAATTGTCCGAAAAAGTTACCGCGAAT
GGCGGGCATGTATATTTTGCCCGTACCAGAGAGGATGCAACCAGTTACATACTGAAGGTGGCGAAAGAAAAAAACGCCAG
GAAGGTTGTTAAATCCAAATCAATGGTGACTGAGGAAATTGGCATGAATGCCGTTCTTCAGAAAGCCGGGATACCCGTGA
TTGAAACGGACCTTGGGGAATATATTCTTCAGCTAGCACATGAGCCGCCATCGCATGTGGTTGTGCCGGCAATACATAAG
GATCGCCATCAAATCCGCAGAGTTTTACATGAACATCTGGGGTATGACGGGCCTGAAACTCCAGAAGCAATGACATTGTT
CATCCGTGAGAAAATCAGACAAGATTTTCTGAGTGCTGAAGTTGGCGTAACGGGATGTAACTTTGCCGTTGCAGAAACAG
GGTCAGTTTGCCTTGTGACAAACGAAGGCAACGCACGGATGTGCACCACATTACCTAAAACACATATTGCTGTTATGGGT
ATGGAGCGTATTGCTCCGACATTCCAGGAGGTGGATGTTCTGATTACCATGCTTGCAAGGAGTGCTGTCGGGGCGAGACT
GACAGGTTATAACACCTGGCTTACAGGCCCCAGAGAAGAAGGACATGTTGATGGTCCGGAAGAGTTCCATCTCATTATTG
TTGACAATGGGCGTTCAGAGATTCTCGGCTCAGAATTCAGCGATGTATTACGATGTATCCGCTGCGGGGCTTGCATTAAT
ACCTGCCCGGCTTATCGTCAGATTGGTGGGCATGGTTATGGTTCAATCTACCCGGGGCCAATCGGCGCGGTTATTTCCCC
ATTGCTTGGGGGATATGAAGACTTTAGGGATTTACCCTATGCCTGCTCATTGTGCACTGCCTGCAATGGGGTATGTCCTG
TAAAAATACCTCTGGCAACGCTAATACAAAAACATCGCCAGGTTATGGCAGAGTCTGAAATCACACCATTAACGGAACGC
CGTATAACCAGAGCATTCAATTACATAAACAGCCATCCGGCGTTGTGGAAGGTAGGTATGGTTGCTGGGGCCAAAACAGC
CCGTCTGTTCATCAGGAAAGGAAAAACGCCGATTAGTGTTGGAGCGATAAAAGAGTGGACTGAAGCCAGAGACCTGCCAT
CACCTGATGGAGAAAGCTTCCGTAGTTGGTTCAAGCGACATAAGAAGGAGGGGTAA

Upstream 100 bases:

>100_bases
AGTTGTCTGCTAAACATCGGCGGTCGGCTTAACCGTGAAGGGCATCCTGTAAAAGTGATGCATATTGCTGAAGTCCTGAT
GCACAGATGAGGTAAACAGA

Downstream 100 bases:

>100_bases
TTTTATGGAAAACAGAGAGGAATTTCTCGTTGCGATCGCCAGAAAGCTTGGCAGACCAGTAAGACATATTCCCGAAGCAA
TGCCGGAGCCTGTAAATACG

Product: putative oxidoreductase subunit with NAD(P)-binding domain and ferridoxin-like domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MSLKTSDIRFKERIRIQIQDPIMRKAVANAQERIGTNRQKMVDELGHWEEWRSRAEQIRRHVLENLDAYLYQLSEKVTAN
GGHVYFARTREDATSYILKVAKEKNARKVVKSKSMVTEEIGMNAVLQKAGIPVIETDLGEYILQLAHEPPSHVVVPAIHK
DRHQIRRVLHEHLGYDGPETPEAMTLFIREKIRQDFLSAEVGVTGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMG
MERIAPTFQEVDVLITMLARSAVGARLTGYNTWLTGPREEGHVDGPEEFHLIIVDNGRSEILGSEFSDVLRCIRCGACIN
TCPAYRQIGGHGYGSIYPGPIGAVISPLLGGYEDFRDLPYACSLCTACNGVCPVKIPLATLIQKHRQVMAESEITPLTER
RITRAFNYINSHPALWKVGMVAGAKTARLFIRKGKTPISVGAIKEWTEARDLPSPDGESFRSWFKRHKKEG

Sequences:

>Translated_471_residues
MSLKTSDIRFKERIRIQIQDPIMRKAVANAQERIGTNRQKMVDELGHWEEWRSRAEQIRRHVLENLDAYLYQLSEKVTAN
GGHVYFARTREDATSYILKVAKEKNARKVVKSKSMVTEEIGMNAVLQKAGIPVIETDLGEYILQLAHEPPSHVVVPAIHK
DRHQIRRVLHEHLGYDGPETPEAMTLFIREKIRQDFLSAEVGVTGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMG
MERIAPTFQEVDVLITMLARSAVGARLTGYNTWLTGPREEGHVDGPEEFHLIIVDNGRSEILGSEFSDVLRCIRCGACIN
TCPAYRQIGGHGYGSIYPGPIGAVISPLLGGYEDFRDLPYACSLCTACNGVCPVKIPLATLIQKHRQVMAESEITPLTER
RITRAFNYINSHPALWKVGMVAGAKTARLFIRKGKTPISVGAIKEWTEARDLPSPDGESFRSWFKRHKKEG
>Mature_470_residues
SLKTSDIRFKERIRIQIQDPIMRKAVANAQERIGTNRQKMVDELGHWEEWRSRAEQIRRHVLENLDAYLYQLSEKVTANG
GHVYFARTREDATSYILKVAKEKNARKVVKSKSMVTEEIGMNAVLQKAGIPVIETDLGEYILQLAHEPPSHVVVPAIHKD
RHQIRRVLHEHLGYDGPETPEAMTLFIREKIRQDFLSAEVGVTGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMGM
ERIAPTFQEVDVLITMLARSAVGARLTGYNTWLTGPREEGHVDGPEEFHLIIVDNGRSEILGSEFSDVLRCIRCGACINT
CPAYRQIGGHGYGSIYPGPIGAVISPLLGGYEDFRDLPYACSLCTACNGVCPVKIPLATLIQKHRQVMAESEITPLTERR
ITRAFNYINSHPALWKVGMVAGAKTARLFIRKGKTPISVGAIKEWTEARDLPSPDGESFRSWFKRHKKEG

Specific function: Unknown

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=470, Percent_Identity=82.5531914893617, Blast_Score=827, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 52697; Mature: 52566

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKTSDIRFKERIRIQIQDPIMRKAVANAQERIGTNRQKMVDELGHWEEWRSRAEQIRR
CCCCCCCCCEEEHEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHH
HVLENLDAYLYQLSEKVTANGGHVYFARTREDATSYILKVAKEKNARKVVKSKSMVTEEI
HHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMNAVLQKAGIPVIETDLGEYILQLAHEPPSHVVVPAIHKDRHQIRRVLHEHLGYDGPET
HHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCC
PEAMTLFIREKIRQDFLSAEVGVTGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCCCEEEECCCCHHHHHHH
MERIAPTFQEVDVLITMLARSAVGARLTGYNTWLTGPREEGHVDGPEEFHLIIVDNGRSE
HHHHCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHH
ILGSEFSDVLRCIRCGACINTCPAYRQIGGHGYGSIYPGPIGAVISPLLGGYEDFRDLPY
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCHH
ACSLCTACNGVCPVKIPLATLIQKHRQVMAESEITPLTERRITRAFNYINSHPALWKVGM
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEHHH
VAGAKTARLFIRKGKTPISVGAIKEWTEARDLPSPDGESFRSWFKRHKKEG
HHCCHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLKTSDIRFKERIRIQIQDPIMRKAVANAQERIGTNRQKMVDELGHWEEWRSRAEQIRR
CCCCCCCCEEEHEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHH
HVLENLDAYLYQLSEKVTANGGHVYFARTREDATSYILKVAKEKNARKVVKSKSMVTEEI
HHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMNAVLQKAGIPVIETDLGEYILQLAHEPPSHVVVPAIHKDRHQIRRVLHEHLGYDGPET
HHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCC
PEAMTLFIREKIRQDFLSAEVGVTGCNFAVAETGSVCLVTNEGNARMCTTLPKTHIAVMG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEECCCCCEEEECCCCHHHHHHH
MERIAPTFQEVDVLITMLARSAVGARLTGYNTWLTGPREEGHVDGPEEFHLIIVDNGRSE
HHHHCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHH
ILGSEFSDVLRCIRCGACINTCPAYRQIGGHGYGSIYPGPIGAVISPLLGGYEDFRDLPY
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHCCHH
ACSLCTACNGVCPVKIPLATLIQKHRQVMAESEITPLTERRITRAFNYINSHPALWKVGM
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEHHH
VAGAKTARLFIRKGKTPISVGAIKEWTEARDLPSPDGESFRSWFKRHKKEG
HHCCHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]