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The map label for this gene is lpfC [H]

Identifier: 218691835

GI number: 218691835

Start: 4149253

End: 4151784

Strand: Reverse

Name: lpfC [H]

Synonym: ECED1_4229

Alternate gene names: 218691835

Gene position: 4151784-4149253 (Counterclockwise)

Preceding gene: 218691836

Following gene: 218691834

Centisome position: 79.7

GC content: 49.88

Gene sequence:

>2532_bases
ATGCATTGGATGCATTTACCTCTTGATCACTACAGAGCGCATTTTTCTTTCTCACTGTTGGCATTAACTATTGCCAGCGC
GTTACCTGCGTACGGCGGAAAATTCAACCCTAAATTTCTTGAAAATGTTCAGGGTATTGATCAACACGTCGATTTGTCAG
TTTACGACTTTCCTGTCGGCCAGCAAATACCCGGTAAATATCGGGTATTTGTGTTTGTAAACGAAGAAAAAATGGCTTCC
CGGACGCTGGATTTTAGTACTGCCAGCGAAGCACAACGCAAAGCCAGCGGCGAGTCGCTTATGCCTTGCCTTAGCCGTGT
TCAACTGGAAGAAATGGGCGTGCGCGTCGACAGCTTTCCGGCACTGAAGATATTGCCACCGGAAGCCTGCGTAGCGTTTG
ATGAAATCATTCCCCAGGCCACCAGTCGTTTTGATTTTAATACTCAGACGTTGCATCTTACCTTTCCACAGGCAGCAATG
ATGATGACCGCTCGTGGCACGGTTGATCCTTCTCGCTGGGACGAAGGAATACCTGCGCTGTTACTGGACTACAGCTTTAG
TGGCAGCAATGGTCGCAACGAAGGTTCCGGTTCATCTCCAGATTCGACCAGTGACAGTTATTACCTGAACCTGCGCAGCG
GTTTGAACGTGGGGCCGTGGCGTTTACGTAATAACAGTATCTGGAACCGTACCGATGGCAAAAATCAATGGGATAACGTT
GGTACATCGTTAAACCGGGCGATTATTCCACTCAAGTCACAGATAACATTGGGTGATACCGCCACGCCTGGCGAGATTTT
TGATAGCGTACAAATGCGCGGGGCATTATTGGCATCCGACGATGAAATGTTGCCGGATAGCCAGCGTGGCTTTGCTCCGG
TGGTGCGTGGCATCGCCAAAAGTAACGCTGAAGTGAGTATCGAACAGAACGGATATGTTATTTATCGTACCTTTGTTCAG
CCGGGCGCATTTGAGATTAACGATCTCTACGCAACCTCCGGCAGCGGTGACTTGACGGTGATCATTAAAGAATCTGACGG
AAGTGAACAACGTTTTATTCAACCATTTTCGGCAGTGGCGATTTTCCAGCGTGAAGGGTATCTGAAATACAGCCTTGCTG
CCGGTGAGTATCGTGCCGGTAATTACGACAGCGGTAAACCGCGATTCGGGCAATTTACTGCCATGTACGGCTTGCCGTGG
GGAATGACCGCCTATGGTGGTGCGTTGCTATCGGCAGACTACAACGCTTTAGCTCTGGGGCTGGGGAAAAACTTCGGCAC
CATTGGTGCGGTATCGGTGGATGTCACCCAGGCGAAAAGTCAGTTACGCAACAATGAAAAAGATGAAGGGCAGTCTTATC
GTTTCCTCTATTCGAAAAGTTTTGAGGGCGGTACCGACCTGCGTCTGTTGGGCTACAAGTACTCAACCAGCGGTTATTAC
ACCTTCCAGGAAGCGACCGATGTCCGTAGTGACGCCGACAGTGACTATCGGCGTTATCATAAGCGCAGCCAGATACAAGG
TAACATCACTCAGCAACTGGGAGACTACGGTTCTGTTTACTTCAATATGACGCAGCAGGATTACTGGAACGTTGATGGTA
AGGAGAACTCCTTAAGCGCTGGTTATCACGGTCATATTGGTCGTGTGAATTACAGTATCGCCTATACCTGGACGAGAAGC
CCTGAATGGGATGAAGACGATCGACTGTGGTCATTTAGCCTCTCAATACCGCTGGGTGGCGCATGGGGCAGTTATCGTAT
GACCACCGACCAGAACGGCAAGACGTCACAACAGGCCTCTGTCAGCGGCACATTACTGGAAGATCGTAACTTGAACTATA
ACGTTCAGCAGGGTTATACCAGTAATGGGGTTGGCAACAGTGGTAGTGTCAACATGGGTTATATGGGAGGTTCTGGCAAC
ATTGACGTGGGTTATAACTATTCCAAAGATAACCAACAAGTTAACTATGGTGTGCGTGGTGGAGTCATTGTTCACAGTGA
AGGTATCACTCTCTCGCAACCCTTGGGTGAAAGTCTGGCAATTGTTTCTGCGCCGGGTGCGCGTGGTGGACATGTAGTAA
ATAGCAGCGGCGTTGAAGTTGACTGGATGGGCAACGCAGTGGTGCCGTATCTCACGCCATATCGTGAAACCATTGTGGAA
TTGCGCAGCGACACGTTAGGGCAAAACGTTGAATTACAGGAAGCGTTTCAGAAAGTCGTTCCAACGCGTGGGGCGATAGT
CCGTTCCCGCTTTGATACGCGTGTCGGTTATCGTGTGCTGATGAGTTTGAAACGGGCGAATGGCAACGCAGTACCGTTTG
GTGCTACCGCAGCGTTAAGTGATGAGAGCAAACCTGCCAGCAGCATTGTGGGTGAAGAAGGACAGCTTTATATCAGCGGG
ATGCCAGAAGAGGGCGAATTGCAGGTGAGCTGGGGGCACGAGCAGGCGCAACGTTGCCGCGTGCCATTCCGCTTGCCAGA
GAAAAAGGATAATTCGGGTATCGTGATGGTTAATGCGGTATGCGATAAATAA

Upstream 100 bases:

>100_bases
AATGCGAACGAAGTGAAATACAGCATTATTAATGATTTCGGTGTCGCCGGTGAAATGCTGACGAAGTCGATTAACTGATC
TTTTTACAAGGCGCTTTACT

Downstream 100 bases:

>100_bases
GGATATGCAGATGAAAATTAAAAACTTGTTGGCAGGTATGGTGCTTTTAGGGACGAGCACCTTTACCGGGAATATATGGG
CTGCGGATTGGGGGCCGTGC

Product: outer membrane usher protein lpfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 843; Mature: 843

Protein sequence:

>843_residues
MHWMHLPLDHYRAHFSFSLLALTIASALPAYGGKFNPKFLENVQGIDQHVDLSVYDFPVGQQIPGKYRVFVFVNEEKMAS
RTLDFSTASEAQRKASGESLMPCLSRVQLEEMGVRVDSFPALKILPPEACVAFDEIIPQATSRFDFNTQTLHLTFPQAAM
MMTARGTVDPSRWDEGIPALLLDYSFSGSNGRNEGSGSSPDSTSDSYYLNLRSGLNVGPWRLRNNSIWNRTDGKNQWDNV
GTSLNRAIIPLKSQITLGDTATPGEIFDSVQMRGALLASDDEMLPDSQRGFAPVVRGIAKSNAEVSIEQNGYVIYRTFVQ
PGAFEINDLYATSGSGDLTVIIKESDGSEQRFIQPFSAVAIFQREGYLKYSLAAGEYRAGNYDSGKPRFGQFTAMYGLPW
GMTAYGGALLSADYNALALGLGKNFGTIGAVSVDVTQAKSQLRNNEKDEGQSYRFLYSKSFEGGTDLRLLGYKYSTSGYY
TFQEATDVRSDADSDYRRYHKRSQIQGNITQQLGDYGSVYFNMTQQDYWNVDGKENSLSAGYHGHIGRVNYSIAYTWTRS
PEWDEDDRLWSFSLSIPLGGAWGSYRMTTDQNGKTSQQASVSGTLLEDRNLNYNVQQGYTSNGVGNSGSVNMGYMGGSGN
IDVGYNYSKDNQQVNYGVRGGVIVHSEGITLSQPLGESLAIVSAPGARGGHVVNSSGVEVDWMGNAVVPYLTPYRETIVE
LRSDTLGQNVELQEAFQKVVPTRGAIVRSRFDTRVGYRVLMSLKRANGNAVPFGATAALSDESKPASSIVGEEGQLYISG
MPEEGELQVSWGHEQAQRCRVPFRLPEKKDNSGIVMVNAVCDK

Sequences:

>Translated_843_residues
MHWMHLPLDHYRAHFSFSLLALTIASALPAYGGKFNPKFLENVQGIDQHVDLSVYDFPVGQQIPGKYRVFVFVNEEKMAS
RTLDFSTASEAQRKASGESLMPCLSRVQLEEMGVRVDSFPALKILPPEACVAFDEIIPQATSRFDFNTQTLHLTFPQAAM
MMTARGTVDPSRWDEGIPALLLDYSFSGSNGRNEGSGSSPDSTSDSYYLNLRSGLNVGPWRLRNNSIWNRTDGKNQWDNV
GTSLNRAIIPLKSQITLGDTATPGEIFDSVQMRGALLASDDEMLPDSQRGFAPVVRGIAKSNAEVSIEQNGYVIYRTFVQ
PGAFEINDLYATSGSGDLTVIIKESDGSEQRFIQPFSAVAIFQREGYLKYSLAAGEYRAGNYDSGKPRFGQFTAMYGLPW
GMTAYGGALLSADYNALALGLGKNFGTIGAVSVDVTQAKSQLRNNEKDEGQSYRFLYSKSFEGGTDLRLLGYKYSTSGYY
TFQEATDVRSDADSDYRRYHKRSQIQGNITQQLGDYGSVYFNMTQQDYWNVDGKENSLSAGYHGHIGRVNYSIAYTWTRS
PEWDEDDRLWSFSLSIPLGGAWGSYRMTTDQNGKTSQQASVSGTLLEDRNLNYNVQQGYTSNGVGNSGSVNMGYMGGSGN
IDVGYNYSKDNQQVNYGVRGGVIVHSEGITLSQPLGESLAIVSAPGARGGHVVNSSGVEVDWMGNAVVPYLTPYRETIVE
LRSDTLGQNVELQEAFQKVVPTRGAIVRSRFDTRVGYRVLMSLKRANGNAVPFGATAALSDESKPASSIVGEEGQLYISG
MPEEGELQVSWGHEQAQRCRVPFRLPEKKDNSGIVMVNAVCDK
>Mature_843_residues
MHWMHLPLDHYRAHFSFSLLALTIASALPAYGGKFNPKFLENVQGIDQHVDLSVYDFPVGQQIPGKYRVFVFVNEEKMAS
RTLDFSTASEAQRKASGESLMPCLSRVQLEEMGVRVDSFPALKILPPEACVAFDEIIPQATSRFDFNTQTLHLTFPQAAM
MMTARGTVDPSRWDEGIPALLLDYSFSGSNGRNEGSGSSPDSTSDSYYLNLRSGLNVGPWRLRNNSIWNRTDGKNQWDNV
GTSLNRAIIPLKSQITLGDTATPGEIFDSVQMRGALLASDDEMLPDSQRGFAPVVRGIAKSNAEVSIEQNGYVIYRTFVQ
PGAFEINDLYATSGSGDLTVIIKESDGSEQRFIQPFSAVAIFQREGYLKYSLAAGEYRAGNYDSGKPRFGQFTAMYGLPW
GMTAYGGALLSADYNALALGLGKNFGTIGAVSVDVTQAKSQLRNNEKDEGQSYRFLYSKSFEGGTDLRLLGYKYSTSGYY
TFQEATDVRSDADSDYRRYHKRSQIQGNITQQLGDYGSVYFNMTQQDYWNVDGKENSLSAGYHGHIGRVNYSIAYTWTRS
PEWDEDDRLWSFSLSIPLGGAWGSYRMTTDQNGKTSQQASVSGTLLEDRNLNYNVQQGYTSNGVGNSGSVNMGYMGGSGN
IDVGYNYSKDNQQVNYGVRGGVIVHSEGITLSQPLGESLAIVSAPGARGGHVVNSSGVEVDWMGNAVVPYLTPYRETIVE
LRSDTLGQNVELQEAFQKVVPTRGAIVRSRFDTRVGYRVLMSLKRANGNAVPFGATAALSDESKPASSIVGEEGQLYISG
MPEEGELQVSWGHEQAQRCRVPFRLPEKKDNSGIVMVNAVCDK

Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=880, Percent_Identity=43.4090909090909, Blast_Score=690, Evalue=0.0,
Organism=Escherichia coli, GI1787172, Length=882, Percent_Identity=42.2902494331066, Blast_Score=674, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=866, Percent_Identity=41.5704387990762, Blast_Score=649, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=860, Percent_Identity=40.9302325581395, Blast_Score=601, Evalue=1e-173,
Organism=Escherichia coli, GI1786332, Length=843, Percent_Identity=31.435349940688, Blast_Score=363, Evalue=1e-101,
Organism=Escherichia coli, GI1788427, Length=789, Percent_Identity=28.7705956907478, Blast_Score=308, Evalue=1e-84,
Organism=Escherichia coli, GI87081778, Length=847, Percent_Identity=29.2798110979929, Blast_Score=273, Evalue=4e-74,
Organism=Escherichia coli, GI1789610, Length=782, Percent_Identity=24.5524296675192, Blast_Score=151, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 92746; Mature: 92746

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHWMHLPLDHYRAHFSFSLLALTIASALPAYGGKFNPKFLENVQGIDQHVDLSVYDFPVG
CCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHCCEEEEECCCC
QQIPGKYRVFVFVNEEKMASRTLDFSTASEAQRKASGESLMPCLSRVQLEEMGVRVDSFP
CCCCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCEECCCC
ALKILPPEACVAFDEIIPQATSRFDFNTQTLHLTFPQAAMMMTARGTVDPSRWDEGIPAL
CEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCHHHHCCCCCEE
LLDYSFSGSNGRNEGSGSSPDSTSDSYYLNLRSGLNVGPWRLRNNSIWNRTDGKNQWDNV
EEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHH
GTSLNRAIIPLKSQITLGDTATPGEIFDSVQMRGALLASDDEMLPDSQRGFAPVVRGIAK
CCCCCCEEEEECCEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHC
SNAEVSIEQNGYVIYRTFVQPGAFEINDLYATSGSGDLTVIIKESDGSEQRFIQPFSAVA
CCCEEEEECCCEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCHHHHHCCHHHEE
IFQREGYLKYSLAAGEYRAGNYDSGKPRFGQFTAMYGLPWGMTAYGGALLSADYNALALG
EEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCEEEECCCCEEEEE
LGKNFGTIGAVSVDVTQAKSQLRNNEKDEGQSYRFLYSKSFEGGTDLRLLGYKYSTSGYY
CCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCEE
TFQEATDVRSDADSDYRRYHKRSQIQGNITQQLGDYGSVYFNMTQQDYWNVDGKENSLSA
EEHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCHHEECCCCCCCCCCC
GYHGHIGRVNYSIAYTWTRSPEWDEDDRLWSFSLSIPLGGAWGSYRMTTDQNGKTSQQAS
CCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCC
VSGTLLEDRNLNYNVQQGYTSNGVGNSGSVNMGYMGGSGNIDVGYNYSKDNQQVNYGVRG
CCEEEEECCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCEEEECCCC
GVIVHSEGITLSQPLGESLAIVSAPGARGGHVVNSSGVEVDWMGNAVVPYLTPYRETIVE
CEEEEECCCEECCCCCCCEEEEECCCCCCCEEECCCCEEEEECCCEECCCCCCHHHHHHH
LRSDTLGQNVELQEAFQKVVPTRGAIVRSRFDTRVGYRVLMSLKRANGNAVPFGATAALS
HHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
DESKPASSIVGEEGQLYISGMPEEGELQVSWGHEQAQRCRVPFRLPEKKDNSGIVMVNAV
CCCCCHHHHCCCCCEEEEECCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCEEEEEEE
CDK
CCC
>Mature Secondary Structure
MHWMHLPLDHYRAHFSFSLLALTIASALPAYGGKFNPKFLENVQGIDQHVDLSVYDFPVG
CCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHCCEEEEECCCC
QQIPGKYRVFVFVNEEKMASRTLDFSTASEAQRKASGESLMPCLSRVQLEEMGVRVDSFP
CCCCCCEEEEEEECCHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCEECCCC
ALKILPPEACVAFDEIIPQATSRFDFNTQTLHLTFPQAAMMMTARGTVDPSRWDEGIPAL
CEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCHHHHCCCCCEE
LLDYSFSGSNGRNEGSGSSPDSTSDSYYLNLRSGLNVGPWRLRNNSIWNRTDGKNQWDNV
EEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHH
GTSLNRAIIPLKSQITLGDTATPGEIFDSVQMRGALLASDDEMLPDSQRGFAPVVRGIAK
CCCCCCEEEEECCEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHC
SNAEVSIEQNGYVIYRTFVQPGAFEINDLYATSGSGDLTVIIKESDGSEQRFIQPFSAVA
CCCEEEEECCCEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCHHHHHCCHHHEE
IFQREGYLKYSLAAGEYRAGNYDSGKPRFGQFTAMYGLPWGMTAYGGALLSADYNALALG
EEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCEEEECCCCEEEEE
LGKNFGTIGAVSVDVTQAKSQLRNNEKDEGQSYRFLYSKSFEGGTDLRLLGYKYSTSGYY
CCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCEE
TFQEATDVRSDADSDYRRYHKRSQIQGNITQQLGDYGSVYFNMTQQDYWNVDGKENSLSA
EEHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCHHEECCCCCCCCCCC
GYHGHIGRVNYSIAYTWTRSPEWDEDDRLWSFSLSIPLGGAWGSYRMTTDQNGKTSQQAS
CCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCC
VSGTLLEDRNLNYNVQQGYTSNGVGNSGSVNMGYMGGSGNIDVGYNYSKDNQQVNYGVRG
CCEEEEECCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCEEEECCCC
GVIVHSEGITLSQPLGESLAIVSAPGARGGHVVNSSGVEVDWMGNAVVPYLTPYRETIVE
CEEEEECCCEECCCCCCCEEEEECCCCCCCEEECCCCEEEEECCCEECCCCCCHHHHHHH
LRSDTLGQNVELQEAFQKVVPTRGAIVRSRFDTRVGYRVLMSLKRANGNAVPFGATAALS
HHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
DESKPASSIVGEEGQLYISGMPEEGELQVSWGHEQAQRCRVPFRLPEKKDNSGIVMVNAV
CCCCCHHHHCCCCCEEEEECCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCEEEEEEE
CDK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]