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The map label for this gene is rbsB [H]

Identifier: 218691544

GI number: 218691544

Start: 3844189

End: 3845085

Strand: Reverse

Name: rbsB [H]

Synonym: ECED1_3912

Alternate gene names: 218691544

Gene position: 3845085-3844189 (Counterclockwise)

Preceding gene: 218691545

Following gene: 218691543

Centisome position: 73.81

GC content: 44.04

Gene sequence:

>897_bases
TTGTTTATGAAAAATATTAAATTACTTGGTTCAGCTATGTTGGTGAGCCTGGCATTGTTCTCGCAAAGTTCGTTGGCAAA
AGAGTATAAAATAGGTGCGTCATTATTAACACAACAACATCCTTTCTATATTGATCTTGCGAATGCCATGAAAGAAGAGG
CAAAAAAAGACAATGTCAATTTAAGTGTCTCTATTGCCAATCAGGATTTAAACAAACAACTTTCTGATGTTGAGGATTTT
ATTACTAAAAAAGTGGATGCCATTATTATCTCTCCGGTCGATTCGAAAGGCGTCCAGGCAGCGATAATTAAAGCCGATAA
GGCCGGTATTCCCGTTATCACCGTTGACGTCGCTGCGGAAGGCGTTCCGGTCGTATCGCATGTTGCGACCGATAACTATG
CGGGAGGCGTTGAAGCAGGCAAGTTAATGGGTAAACTTTTGCATGGTAAAGGTACTGTAGCCATTATTTCTTATCCGGCA
CTACAATCGGTGGTTGCGCGCGTTGATGGTTTTAAGAAAGGGTTAAGCGATACACCGGATATTAAAATTGTTGCTGAACA
GCCTGGTATTACGCGGGCTGAAGCGTTAACGACTGCGCAAAACATTATGCAGGCAAACGCCAACCTGAATGGTCTGTTTG
GCTTTGGTGATGATGCGGCGCTGGCAGCGGTTATCGCAGCAAAATCTGCGCATAACGACAACATCAAAATCATTGGTTTT
GACGGCATGAAAGAAGCGCGTGATGCCGTTGACAGTGAAAAAACGTTTGCGGCCGTGATTCGGCAATATCCCGATCAAAT
GGGGGCTAAAGCCATTGATGCCGCTGTTGATCACCTCAATGGTAAACCGGTAGAAAAAATGATCCCGGTACAACCCGGCG
TTTATACAGGTAAATAG

Upstream 100 bases:

>100_bases
CCGCAAAGGCCGCCATGAAAGAAGTCGTAACTCGTATTATTGGCGTCTGTGGTAGTGAAGGAAAAATTTAAGACGTTGTA
CCCTACAAAAATAATGAGGA

Downstream 100 bases:

>100_bases
TAAATATCTTCACCTCACAACAAAACGTTATTGGCGTTTTGTTGTGACACCGAGGTCATTATGACGGATGTTATTCTTGA
TGTTTCGCATATTGCGAAGA

Product: putative ABC-type sugar transport system, periplasmic component

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MFMKNIKLLGSAMLVSLALFSQSSLAKEYKIGASLLTQQHPFYIDLANAMKEEAKKDNVNLSVSIANQDLNKQLSDVEDF
ITKKVDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMGKLLHGKGTVAIISYPA
LQSVVARVDGFKKGLSDTPDIKIVAEQPGITRAEALTTAQNIMQANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIGF
DGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPVQPGVYTGK

Sequences:

>Translated_298_residues
MFMKNIKLLGSAMLVSLALFSQSSLAKEYKIGASLLTQQHPFYIDLANAMKEEAKKDNVNLSVSIANQDLNKQLSDVEDF
ITKKVDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMGKLLHGKGTVAIISYPA
LQSVVARVDGFKKGLSDTPDIKIVAEQPGITRAEALTTAQNIMQANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIGF
DGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPVQPGVYTGK
>Mature_298_residues
MFMKNIKLLGSAMLVSLALFSQSSLAKEYKIGASLLTQQHPFYIDLANAMKEEAKKDNVNLSVSIANQDLNKQLSDVEDF
ITKKVDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAEGVPVVSHVATDNYAGGVEAGKLMGKLLHGKGTVAIISYPA
LQSVVARVDGFKKGLSDTPDIKIVAEQPGITRAEALTTAQNIMQANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIGF
DGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPVQPGVYTGK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=292, Percent_Identity=32.5342465753425, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1790526, Length=280, Percent_Identity=30.3571428571429, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788898, Length=304, Percent_Identity=27.6315789473684, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790674, Length=210, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 31443; Mature: 31443

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMKNIKLLGSAMLVSLALFSQSSLAKEYKIGASLLTQQHPFYIDLANAMKEEAKKDNVN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCE
LSVSIANQDLNKQLSDVEDFITKKVDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAE
EEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCEEEEEEECCCCCCEEEEEECCC
GVPVVSHVATDNYAGGVEAGKLMGKLLHGKGTVAIISYPALQSVVARVDGFKKGLSDTPD
CCCHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCC
IKIVAEQPGITRAEALTTAQNIMQANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIGF
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
DGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPVQPGVYTGK
CCHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure
MFMKNIKLLGSAMLVSLALFSQSSLAKEYKIGASLLTQQHPFYIDLANAMKEEAKKDNVN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCE
LSVSIANQDLNKQLSDVEDFITKKVDAIIISPVDSKGVQAAIIKADKAGIPVITVDVAAE
EEEEECCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCEEEEEEECCCCCCEEEEEECCC
GVPVVSHVATDNYAGGVEAGKLMGKLLHGKGTVAIISYPALQSVVARVDGFKKGLSDTPD
CCCHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCC
IKIVAEQPGITRAEALTTAQNIMQANANLNGLFGFGDDAALAAVIAAKSAHNDNIKIIGF
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
DGMKEARDAVDSEKTFAAVIRQYPDQMGAKAIDAAVDHLNGKPVEKMIPVQPGVYTGK
CCHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]