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The map label for this gene is ygdB [H]

Identifier: 218690950

GI number: 218690950

Start: 3225521

End: 3225928

Strand: Reverse

Name: ygdB [H]

Synonym: ECED1_3280

Alternate gene names: 218690950

Gene position: 3225928-3225521 (Counterclockwise)

Preceding gene: 218690951

Following gene: 218690949

Centisome position: 61.92

GC content: 53.19

Gene sequence:

>408_bases
GTGAACCGCGAAAAGGGTGTTTCGTCACTGGCTCTGGTCCTGATGCTGCTGATTTTGGGTAGCTTGCTATTGCAAGGAAT
GAGTCAGCAGGATCGCAGTTTTGCTTCTCGCGTGAGCATGGAAAGTCAGTCATTGCGCCGCCAGGCCATCGTTCAGTCGG
CGCTGGAGTGGGGAAAAATGCACTCCTGGCAGACGCAGCCCGCAGTTCAGTGCTTACTGTATGCTGCCACCGGTGCCCGG
GTTTGTCTGCGTTTACTGGCAGATAATGAAGCCTTATTGATTGCTGGTTATGAAGGCGTTTCGTTGTGGCGAACAGGCGA
AGTCATCGATGGAAACATTGTTTTTTCGCCACGCGGCTGGAGCGATTTTTGTCCGCTGAAAGAGAGGGCGTTATGTCAGC
TTCCCTGA

Upstream 100 bases:

>100_bases
GCGGCTTCTCGCCGGTGTTGACGGTTAATATGCACGCTGCCAGCAAGGCTGATCCGCAAACCGTGGTGGATGCCAGCTAT
AGCGTGACAGGATCCAACCT

Downstream 100 bases:

>100_bases
GGAATCAACAAGGCTTTAGTCTGCCGGAGGTAATGTTGGCGATGGTGTTGATGGTGATGATTGTCACTGCGTTATCGGGT
TTCCAGCGAACATTAATGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MNREKGVSSLALVLMLLILGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALEWGKMHSWQTQPAVQCLLYAATGAR
VCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP

Sequences:

>Translated_135_residues
MNREKGVSSLALVLMLLILGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALEWGKMHSWQTQPAVQCLLYAATGAR
VCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP
>Mature_135_residues
MNREKGVSSLALVLMLLILGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALEWGKMHSWQTQPAVQCLLYAATGAR
VCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082164, Length=135, Percent_Identity=94.0740740740741, Blast_Score=224, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019652 [H]

Pfam domain/function: PF10713 DUF2509 [H]

EC number: NA

Molecular weight: Translated: 14953; Mature: 14953

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNREKGVSSLALVLMLLILGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALEWGKM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HSWQTQPAVQCLLYAATGARVCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGW
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCEECCEEEECCCCC
SDFCPLKERALCQLP
CCCCCCCHHHHCCCC
>Mature Secondary Structure
MNREKGVSSLALVLMLLILGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALEWGKM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HSWQTQPAVQCLLYAATGARVCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGW
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCEECCEEEECCCCC
SDFCPLKERALCQLP
CCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503 [H]