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The map label for this gene is ppdB [H]

Identifier: 218690951

GI number: 218690951

Start: 3225925

End: 3226488

Strand: Reverse

Name: ppdB [H]

Synonym: ECED1_3281

Alternate gene names: 218690951

Gene position: 3226488-3225925 (Counterclockwise)

Preceding gene: 218690952

Following gene: 218690950

Centisome position: 61.93

GC content: 52.84

Gene sequence:

>564_bases
ATGCCTGTAAAAGAGCAAGGTTTTTCTCTGCTGGAAGTGTTGATTGCTATGGCGATCAGTAGCGTATTGTTGCTGGGGGC
TGCACGCTTTCTGCCTGCGTTACAGCGTGAAAGTTTAACGAACACCCGTAAGCTGGCGCTGGAAGATGAAATCTGGCTGC
GGGTATTTACCGTCGCGAAGCATCTCCAGAGGGCGGGTTATTGCCATGGCAGCTGTACGGGCGAAGGGCTGGAAATTGTC
GGACAGGGTGACTGTGTCATTGTGCAGTGGGATGCGAACAGTAATGGTATCTGGGATCGCGAACCGGTAAAAGAGTCCGA
CCAGATTGGATTTCGTCTGAAGGAGCATGTGCTGGAAACGCTACGCGGTGCGACATCCTGTGAAGGTAAGGGCTGGGATA
AAGTCACTAATCCGGATGCCATCATTATCGACACTTTTCAGGTCGTACGTCAGGATGTCAGCGGCTTCTCGCCGGTGTTG
ACGGTTAATATGCACGCTGCCAGCAAGGCTGATCCGCAAACCGTGGTGGATGCCAGCTATAGCGTGACAGGATCCAACCT
GTGA

Upstream 100 bases:

>100_bases
GGGCCGGGCATATTCGCTTCAAAAACTCAACGGGCGAGTGGTGGCTGGTGGTTTCGCCGTGGGGAAGACTCCGGCTTTGT
CAGCAAGGAGAAACAGAAGG

Downstream 100 bases:

>100_bases
ACCGCGAAAAGGGTGTTTCGTCACTGGCTCTGGTCCTGATGCTGCTGATTTTGGGTAGCTTGCTATTGCAAGGAATGAGT
CAGCAGGATCGCAGTTTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTNTRKLALEDEIWLRVFTVAKHLQRAGYCHGSCTGEGLEIV
GQGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL
TVNMHAASKADPQTVVDASYSVTGSNL

Sequences:

>Translated_187_residues
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTNTRKLALEDEIWLRVFTVAKHLQRAGYCHGSCTGEGLEIV
GQGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL
TVNMHAASKADPQTVVDASYSVTGSNL
>Mature_186_residues
PVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTNTRKLALEDEIWLRVFTVAKHLQRAGYCHGSCTGEGLEIVG
QGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLT
VNMHAASKADPQTVVDASYSVTGSNL

Specific function: Not yet known [H]

COG id: COG4795

COG function: function code U; Type II secretory pathway, component PulJ

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789189, Length=187, Percent_Identity=96.2566844919786, Blast_Score=372, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR016419
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 20412; Mature: 20281

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTNTRKLALEDEIWLRVFTVAK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECHHHHHHHHHHHH
HLQRAGYCHGSCTGEGLEIVGQGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLET
HHHHCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMHAASKADPQTVVDASY
HCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCE
SVTGSNL
EECCCCC
>Mature Secondary Structure 
PVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTNTRKLALEDEIWLRVFTVAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECHHHHHHHHHHHH
HLQRAGYCHGSCTGEGLEIVGQGDCVIVQWDANSNGIWDREPVKESDQIGFRLKEHVLET
HHHHCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMHAASKADPQTVVDASY
HCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCE
SVTGSNL
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814 [H]