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The map label for this gene is ygcU [H]

Identifier: 218690892

GI number: 218690892

Start: 3153758

End: 3155212

Strand: Reverse

Name: ygcU [H]

Synonym: ECED1_3221

Alternate gene names: 218690892

Gene position: 3155212-3153758 (Counterclockwise)

Preceding gene: 218690893

Following gene: 218690891

Centisome position: 60.57

GC content: 50.58

Gene sequence:

>1455_bases
ATGTCTTTATCTCGCGTAGCGATTGTCGACCAGCTAAAGGAAATTGTTGGTGCAGATCGCGTAATTACCGATGAAACAGT
ATTAAAGAAGAACAGTATTGACCGTTTTCGTAAATTTCCGGATATTCATGGCATTTATACTTTGCCAATTCCGGCAGCGG
TCGTAAAACTCGGTTCCACAGAACAAGTATCCCGTGTGCTGAATTTTATGAATGCGCACAAAATTAACGGTGTGCCACGT
ACCGGTGCTTCCGCCACCGAAGGTGGGCTGGAAACCGTTGTGGAAAACTCGGTGGTGCTCGACGGCTCCGCCATGAATCA
AATCATTAATATTGATATTGAGAATATGCAGGCCACGGCGCAATGTGGCGTTCCGCTGGAGGTGCTGGAAAACGCGTTGC
GTGAAAAAGGTTACACCACGGGGCATTCTCCGCAGTCAAAGCCGCTGGCGCAGATGGGCGGCCTGGTGGCGACCCGCAGT
ATTGGGCAGTTTTCCACACTCTACGGCGCAATCGAGGATATGGTCGTTGGTCTGGAAGCGGTACTGGCAGATGGCACCAT
CACACGCATTAAAAACGTGCCACGTCGCGCGGCTGGCCCGGACATTCGTCATATCATCATCGGCAACGAAGGTGCACTGT
GCTATATCACTGAAGTCACAGTGAAAATCTTCAAATTTACGCCGGAAAACAATCTCTTCTACGGCTATATCCTGGAAGAG
ATGAAAACCGGCTTCAACATCCTGCGTGAAATCATGGTGGAAGGGTATCGTCCGTCGATTGCTCGTTTGTATGATGCTGA
AGATGGCACCCAACACTTCACCCATTTTGCCGACGGTAAATGTGTACTGATCTTTATGGCTGAAGGTAACTCTCGCATTG
CGAAGGCGACGGGCGAAGGGATTGCGGAAATCGTTGCCCGTTACCCGCAATGCCAGCGCGTGGACAGCAAGCTGATCGAA
ACCTGGTTTAACAACCTGAACTGGGGACCGGATAAAGTGGCTGCCGAACGTGTGCAGATCCTCAAAACCGGCAACATGGG
CTTTACCACCGAAGTGTCCGGCTGCTGGAGCTGCATTCACGAAATCTACGAAAGCGTTATTAACCGTATTCGTACCGAGT
TCCCGCACGCCGACGACATCACCATGCTGGGCGGTCACTCCTCTCATAGCTATCAGAACGGCACCAACATGTACTTCGTC
TACGACTACAACGTCGTTGACTGTAAGCCGGAAGAGGAAATCGACAAGTACCACAATCCGCTCAACAAAATCATCTGCGA
AGAAACCATTCGTCTCGGCGGTTCGATGGTGCACCACCACGGTATCGGTAAACATCGCGTTCACTGGAGCAAACTGGAAC
ACGGCAGCGCGTGGGCGTTGCTGGAAGGGCTGAAAAAGCAGTTCGATCCTAATGACATTATGAACACGGGTACTATCTAT
CCGATTGAAAAATAA

Upstream 100 bases:

>100_bases
AGTGGTTGATGGCGGTTATTTAGTGCGCTAATTCATAACGGTGGTTTCTGTTTTCTCTTATTAATAACTATTCCATTTTT
ATTATCAGGAAGGAATTACT

Downstream 100 bases:

>100_bases
TGTGTCAGGCAGCGTTCCGCGATGACGGGGCGTTGCCTTTTCGGCTTCTCAGGCGAGAAGCCGTTCTTATTACCGGACAA
TGAAGGGGTAAAGATGAACA

Product: putative FAD containing dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MSLSRVAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPR
TGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRS
IGQFSTLYGAIEDMVVGLEAVLADGTITRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEE
MKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNSRIAKATGEGIAEIVARYPQCQRVDSKLIE
TWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFV
YDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNDIMNTGTIY
PIEK

Sequences:

>Translated_484_residues
MSLSRVAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPR
TGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRS
IGQFSTLYGAIEDMVVGLEAVLADGTITRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEE
MKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNSRIAKATGEGIAEIVARYPQCQRVDSKLIE
TWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFV
YDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNDIMNTGTIY
PIEK
>Mature_483_residues
SLSRVAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRT
GASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSI
GQFSTLYGAIEDMVVGLEAVLADGTITRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEEM
KTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNSRIAKATGEGIAEIVARYPQCQRVDSKLIET
WFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVY
DYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNDIMNTGTIYP
IEK

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI4501993, Length=456, Percent_Identity=28.7280701754386, Blast_Score=153, Evalue=4e-37,
Organism=Homo sapiens, GI37595756, Length=220, Percent_Identity=27.7272727272727, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI119964728, Length=202, Percent_Identity=26.7326732673267, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI48994907, Length=484, Percent_Identity=98.7603305785124, Blast_Score=996, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17556096, Length=469, Percent_Identity=27.9317697228145, Blast_Score=166, Evalue=3e-41,
Organism=Caenorhabditis elegans, GI71992373, Length=492, Percent_Identity=24.5934959349593, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71992381, Length=485, Percent_Identity=23.2989690721649, Blast_Score=83, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6320027, Length=175, Percent_Identity=32.5714285714286, Blast_Score=95, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6320023, Length=169, Percent_Identity=30.7692307692308, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6320764, Length=179, Percent_Identity=27.9329608938547, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24653753, Length=486, Percent_Identity=25.9259259259259, Blast_Score=155, Evalue=5e-38,
Organism=Drosophila melanogaster, GI18921117, Length=169, Percent_Identity=29.585798816568, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24639277, Length=169, Percent_Identity=29.585798816568, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24639275, Length=169, Percent_Identity=29.585798816568, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 53814; Mature: 53683

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSRVAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGST
CCCHHHHHHHHHHHHHCCCCEECCHHHHHHCCHHHHHCCCCCCCEEECCHHHHHHHCCCH
EQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEEECCHHHHHEEEEEECCCCHHH
QCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEA
HCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHH
VLADGTITRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEE
HHCCCHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEHHHHHH
MKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNSRIAKATGEG
HHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHEECCCCEEEEEEECCCCEEEHHHHHH
IAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIH
HHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH
EIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNP
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHCH
LNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNDIMNTGTIY
HHHHHHHHHHHHCCHHHHHCCCCCCCEEHHHCCCCCHHHHHHHHHHHCCCCHHCCCCCEE
PIEK
ECCC
>Mature Secondary Structure 
SLSRVAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGST
CCHHHHHHHHHHHHHCCCCEECCHHHHHHCCHHHHHCCCCCCCEEECCHHHHHHHCCCH
EQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEEECCHHHHHEEEEEECCCCHHH
QCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEA
HCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHH
VLADGTITRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEE
HHCCCHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEHHHHHH
MKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNSRIAKATGEG
HHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHEECCCCEEEEEEECCCCEEEHHHHHH
IAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIH
HHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH
EIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNP
HHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHCH
LNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNDIMNTGTIY
HHHHHHHHHHHHCCHHHHHCCCCCCCEEHHHCCCCCHHHHHHHHHHHCCCCHHCCCCCEE
PIEK
ECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]