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The map label for this gene is irp

Identifier: 218689979

GI number: 218689979

Start: 2190067

End: 2190870

Strand: Direct

Name: irp

Synonym: ECED1_2252

Alternate gene names: NA

Gene position: 2190067-2190870 (Clockwise)

Preceding gene: 218689978

Following gene: 218689980

Centisome position: 42.04

GC content: 58.21

Gene sequence:

>804_bases
GTGACGCAATCTGCAATGTGCATCCCGCTGTGGCCCGCCCGGAACGGCAATACTGCGCATCTGGTCATGTGCCCTTTCGC
TGGCGGCAGCAGTAGCGCGTTTCGCCACTGGCAAGCTGAGCAACTGGCTGATTGCGCGCTTTCTCTGGTGACCTGGCCGG
GGCGCGATCGCCTTCGCCATCTGGAACCGCTCAGAAGCATTACACAACTGGCGGCACTGCTGGCGAACGAGCTGGAAGCA
TCCGTATCGCCTGACACGCCGCTTTTACTCGCCGGGCACAGCATGGGGGCGCAGGTGGCGTTTGAAACCTGCCGACTTCT
GGAGCAACGGGGGCTTGCGCCACAAGGACTGATTATTTCCGGGTGCCATGCCCCGCATCTGCATTCTGAACGCCAGCTCA
GCCATCGCGATGATGCCGACTTTATCGCTGAGCTGATAGACATTGGCGGATGTTCTCCTGAACTGCAGGAAAACCAGGAA
TTAATGTCGCTGTTTCTTCCTCTTCTGCGCGCTGATTTTTACGCCACCGAGAGCTATCACTACGACTCGCCCGACGTCTG
TCCGCCGCTGCGCACGCCTGCGCTGTTATTGTGCGGCAGCCACGATCGCGAAGCCTCCTGGCAGCAGGTCGATGCCTGGC
GTCAGTGGCTGAGCCACGTTACAGGCCCGGTGGTGATTGACGGCAATCATTTCTATCCCATTCAACAAGCCCGGTCCTTT
TTTACGCAGATTGTCCGCCATTTTCCCCACGCATTTTCTGCAATGACCGCGTTGCAAAAACAGCCCAGTACTTCAGAAAG
GTGA

Upstream 100 bases:

>100_bases
AGATTTTACGTAAGACCGGCAATGCGGAGATCAGACGCCTGACACCGCCGCACCACGACCGGTTAGCCGGTTTCTACAAC
GATGATGATAAGGAGGCGCT

Downstream 100 bases:

>100_bases
CGCATGAATTCTTCCTTTAAATCTCTGATTGAACAGTATCCCTTACCCATTGCCGAACAGTTGCGCCACTGGGCGGCCCG
TTATGCCTCGCGAATTGCCG

Product: putative thioesterase YbtT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MTQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLADCALSLVTWPGRDRLRHLEPLRSITQLAALLANELEA
SVSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIISGCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELQENQE
LMSLFLPLLRADFYATESYHYDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGNHFYPIQQARSF
FTQIVRHFPHAFSAMTALQKQPSTSER

Sequences:

>Translated_267_residues
MTQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLADCALSLVTWPGRDRLRHLEPLRSITQLAALLANELEA
SVSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIISGCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELQENQE
LMSLFLPLLRADFYATESYHYDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGNHFYPIQQARSF
FTQIVRHFPHAFSAMTALQKQPSTSER
>Mature_266_residues
TQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLADCALSLVTWPGRDRLRHLEPLRSITQLAALLANELEAS
VSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIISGCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELQENQEL
MSLFLPLLRADFYATESYHYDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGNHFYPIQQARSFF
TQIVRHFPHAFSAMTALQKQPSTSER

Specific function: Probable thioesterase [H]

COG id: COG3208

COG function: function code Q; Predicted thioesterase involved in non-ribosomal peptide biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioesterase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012223
- InterPro:   IPR001031 [H]

Pfam domain/function: PF00975 Thioesterase [H]

EC number: NA

Molecular weight: Translated: 29724; Mature: 29593

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLADCALSLVTWPGRDRLRH
CCCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LEPLRSITQLAALLANELEASVSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIIS
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEE
GCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELQENQELMSLFLPLLRADFYATESYH
CCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
YDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGNHFYPIQQARSF
CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCEECCHHHHHHH
FTQIVRHFPHAFSAMTALQKQPSTSER
HHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TQSAMCIPLWPARNGNTAHLVMCPFAGGSSSAFRHWQAEQLADCALSLVTWPGRDRLRH
CCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LEPLRSITQLAALLANELEASVSPDTPLLLAGHSMGAQVAFETCRLLEQRGLAPQGLIIS
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEE
GCHAPHLHSERQLSHRDDADFIAELIDIGGCSPELQENQELMSLFLPLLRADFYATESYH
CCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
YDSPDVCPPLRTPALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGNHFYPIQQARSF
CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCEECCHHHHHHH
FTQIVRHFPHAFSAMTALQKQPSTSER
HHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2311935; 8335354 [H]