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The map label for this gene is ynjC [H]

Identifier: 218689696

GI number: 218689696

Start: 1913228

End: 1914718

Strand: Direct

Name: ynjC [H]

Synonym: ECED1_1957

Alternate gene names: 218689696

Gene position: 1913228-1914718 (Clockwise)

Preceding gene: 218689695

Following gene: 218689697

Centisome position: 36.73

GC content: 56.81

Gene sequence:

>1491_bases
ATGATGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCTGACGCTGATATCGCCTGCTTTGTCGTTGACGCACTGGCA
GGCGTTATTTGCCGATCCACAGTTACCGCAGGCATTACTGGCAACGCTGGTGTCGACAACCATTGCGGCGGTCGGGGCGT
TGTTGATTGCCCTGCTGGTGATTGTGGCGCTGTGGCCAGGGCCGAAATGGCAGCGTATGTGCGCCCGTCTGCCGTGGCTG
CTCGCCATTCCCCATGTGGCTTTTGCCACCAGCGCCCTTCTGATCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCC
GTATTTCACTCCGCCAATGGACAAATTGGGTATTGGGCTGGGCCTCACCCTGGCGGTAAAAGAAAGCGCATTTCTGCTGT
GGATCTTAGCAGCAGTATTGAGCGAAAAACGGCTGTTGCAGCAACTCATTGTGCTGGATTCGCTGGGCTACAGCCGCTGG
CAATGCCTGAACTGGCTGCTGTTGCCCTCCGTCGCGTCTGCGTTAGCAATGGCGATGCTGGCGATTGTCGCCTGGTCGCT
GTCGGTCGTGGATGTGGCGATTATTCTTGGGCCAGGTAATCCCCCGACGCTGGCGGTAATTAGCTGGCAGTGGTTAACTC
AGGGCGACGCCGATCAACAAACGAAAGGTGCACTCGCCAGCCTGCTGCTGATGCTGTTACTCGCCGCCTACGTTTTGCTG
GGCTATCTGCTATGGCGTGGCTGGCGACGTACTATTCCCCGCGTAGATGGCGTTCGTAAGCCTGCCACGCCTTTATTGCC
AGGCAATACGCTGGCGAGTTTTTTACCCTTAACCGGTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATCAGTCGA
CGATCAATAGTGAAGCGCTCATCAACAGCCTGACAATGGGGCTGGTGGCGGCATTCATCGCTTTGCTCCTGTTACTGCTG
TGGCAGGAATGGGGGCCACAGCGTCGCCAGTTGTGGCTATGGTTGCCCATTTTATTACCCGCTCTGCCTCTGGTGGCGGG
CCAGTACACGCTGGCGCTATGGCTGAACCTGGATGGAAGCTGGACGGCGGTGGTCTGGGGGCATCTGCTGTGGGTAATGC
CGTGGATGCTGTTTATCCTGCAACCCGCCTGGCAGCGCATTGATTCACGGTTAATTTTGATTGCGCAAACACTGGGCTGG
TCGCGGGCCAAAATCTTCTTTTACGTAAAATGCCCACTCATGTTGCGCCCTGCGCTGATTGCCTTCGCGGTGGGATTTTC
AGTCAGTATTGCGCAGTATATGCCGACGCTGTGGCTGGGCGCGGGGCGTTTTCCGACGCTCACCACTGAAGCGGTGGCAT
TAAGCAGCGGCGGCAGCAACGGTATTCTCGCCGCCCAGGCTTTATGGCAACTGCTGTTACCGCTTATTATTTTTGCCCTG
ACCGCGTTAGTCGCAAAATGGGTAGGTTATGTCAGACAAGGACTCCGCTAA

Upstream 100 bases:

>100_bases
TGCCGCCTGTACTGGCTGAACCGCACGCAGGTTGGGTAAATGCGCTGGAACAAGAATGGCTACACCGTTACAGTACGCAT
TAATCTTTTTGCTGTGGGCG

Downstream 100 bases:

>100_bases
TGCTCTGCGTGAAAAATGTTTCGCTACGTTTACCAGAAAGCCGCTTGCTGACAAACGTTAACTTTTCAGTAGATAAAGGT
GACATTGTCACGTTAATGGG

Product: fused putative transporter subunits of ABC superfamily: membrane components

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MMAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWL
LAIPHVAFATSALLIFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRW
QCLNWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
GYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVAAFIALLLLLL
WQEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGW
SRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
TALVAKWVGYVRQGLR

Sequences:

>Translated_496_residues
MMAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWL
LAIPHVAFATSALLIFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRW
QCLNWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
GYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVAAFIALLLLLL
WQEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGW
SRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
TALVAKWVGYVRQGLR
>Mature_496_residues
MMAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWL
LAIPHVAFATSALLIFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRW
QCLNWLLLPSVASALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
GYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVAAFIALLLLLL
WQEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGW
SRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
TALVAKWVGYVRQGLR

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=496, Percent_Identity=96.5725806451613, Blast_Score=821, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 54287; Mature: 54287

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLV
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVALWPGPKWQRMCARLPWLLAIPHVAFATSALLIFADGGLLYDYFPYFTPPMDKLGIGL
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCHHHCCCCCCCCHHHHCCCC
GLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRWQCLNWLLLPSVASALAMAML
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
HHHHHHHHHHEEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINSEAL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
INSLTMGLVAAFIALLLLLLWQEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDGS
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
WTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCEEEEEEEECHHHHHHHHH
AFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
TALVAKWVGYVRQGLR
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMAVIYAPLIPAALTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLV
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVALWPGPKWQRMCARLPWLLAIPHVAFATSALLIFADGGLLYDYFPYFTPPMDKLGIGL
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCHHHCCCCCCCCHHHHCCCC
GLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRWQCLNWLLLPSVASALAMAML
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLL
HHHHHHHHHHEEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GYLLWRGWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVVLLAILADQSTINSEAL
HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
INSLTMGLVAAFIALLLLLLWQEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDGS
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
WTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCEEEEEEEECHHHHHHHHH
AFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
TALVAKWVGYVRQGLR
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]