BacMap

Definition	Escherichia coli ED1a chromosome, complete genome.
Accession	NC_011745
Length	5,209,548

Click here to switch to the map view.

The map label for this gene is ynjD [H]

Identifier: 218689697

GI number: 218689697

Start: 1914718

End: 1915371

Strand: Direct

Name: ynjD [H]

Synonym: ECED1_1958

Alternate gene names: 218689697

Gene position: 1914718-1915371 (Clockwise)

Preceding gene: 218689696

Following gene: 218689698

Centisome position: 36.75

GC content: 51.99

Gene sequence:

>654_bases
ATGCTCTGCGTGAAAAATGTTTCGCTACGTTTACCAGAAAGCCGCTTGCTGACAAACGTTAACTTTTCAGTAGATAAAGG
TGACATTGTCACGTTAATGGGACCATCCGGCTGCGGGAAATCCACTCTGTTTTCGTGGATGATTGGTGCGCTGGCCGGAC
AGTTTTCTTGTACAGGGGAGCTATGGCTTAATGAGCAACGGATTGACATGCTACCCACCGCACAGCGTCAGATTGGCATT
CTTTTCCAGGATGCACTGTTATTTGACCAGTTCAGCGTCGGGCAAAATTTACTGCTGGCGCTACCGGAGACATTTAAGGG
GAATGCCCGACGTAATGCCGTGAATGATGCACTTGAGCGTTCAGGCCTTGACGGAGCGTTCCATCAGGATCCTGCCACTT
TGTCTGGCGGTCAGCGAGCGCGCGTTGCTCTGCTGCGCGCCCTTCTCGCTCAGCCAAAAGCGTTGCTACTGGATGAGCCA
TTCAGCCGTCTTGATGTGGCCCTGCGCGATAATTTTCGCCATTGGGTGTTCAGCGAAATTCGCGCCATGGCGATCCCTGT
TGTGCAGGTGACGCACGATCTTCAGGATGTTCCTCCTGATAGCCCCGTTCTGGATATGGCGCAGTGGTCAGAAAATTACA
ACAAACTGCGATAA

Upstream 100 bases:

>100_bases
CCGCCCAGGCTTTATGGCAACTGCTGTTACCGCTTATTATTTTTGCCCTGACCGCGTTAGTCGCAAAATGGGTAGGTTAT
GTCAGACAAGGACTCCGCTA

Downstream 100 bases:

>100_bases
CGCAAAGTTTTTCCCGATGCGTCAGTTCAGAATGGCGCTCTCAAAACTACAATGTCGGGATTTTCGATGAAACGTGTTTC
TCAAATGACCGCGCTGGCAA

Product: putative sulfate/thiosulfate ABC transporter ATP-binding protein transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLCVKNVSLRLPESRLLTNVNFSVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPETFKGNARRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRHWVFSEIRAMAIPVVQVTHDLQDVPPDSPVLDMAQWSENYNKLR

Sequences:

>Translated_217_residues
MLCVKNVSLRLPESRLLTNVNFSVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPETFKGNARRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRHWVFSEIRAMAIPVVQVTHDLQDVPPDSPVLDMAQWSENYNKLR
>Mature_217_residues
MLCVKNVSLRLPESRLLTNVNFSVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPETFKGNARRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRHWVFSEIRAMAIPVVQVTHDLQDVPPDSPVLDMAQWSENYNKLR

Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]

COG id: COG4136

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42490749, Length=186, Percent_Identity=32.258064516129, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI255708477, Length=173, Percent_Identity=32.9479768786127, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI148612844, Length=173, Percent_Identity=32.9479768786127, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI27881501, Length=182, Percent_Identity=28.021978021978, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI42741659, Length=173, Percent_Identity=31.7919075144509, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI30795238, Length=182, Percent_Identity=28.021978021978, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27262624, Length=154, Percent_Identity=32.4675324675325, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI27262626, Length=154, Percent_Identity=32.4675324675325, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI46592956, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI46592978, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI46592971, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI46592964, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI46592915, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI46592898, Length=154, Percent_Identity=31.1688311688312, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI4505771, Length=168, Percent_Identity=32.1428571428571, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI9961252, Length=168, Percent_Identity=32.1428571428571, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=94.9308755760369, Blast_Score=421, Evalue=1e-119,
Organism=Escherichia coli, GI1790467, Length=194, Percent_Identity=36.0824742268041, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI87081709, Length=191, Percent_Identity=34.5549738219895, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1786253, Length=177, Percent_Identity=36.7231638418079, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI87081791, Length=197, Percent_Identity=33.502538071066, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788761, Length=200, Percent_Identity=32.5, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082267, Length=184, Percent_Identity=33.1521739130435, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1787712, Length=192, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787029, Length=203, Percent_Identity=33.0049261083744, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1786563, Length=181, Percent_Identity=34.2541436464088, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1787370, Length=184, Percent_Identity=31.5217391304348, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=32.994923857868, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1789593, Length=198, Percent_Identity=29.7979797979798, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1786872, Length=200, Percent_Identity=36, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789873, Length=186, Percent_Identity=33.8709677419355, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1786698, Length=201, Percent_Identity=32.8358208955224, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790544, Length=182, Percent_Identity=33.5164835164835, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=32.3383084577114, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1789672, Length=171, Percent_Identity=34.5029239766082, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=29.8245614035088, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=31.8407960199005, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1789032, Length=184, Percent_Identity=29.8913043478261, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788897, Length=205, Percent_Identity=28.2926829268293, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786398, Length=185, Percent_Identity=34.0540540540541, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1789962, Length=195, Percent_Identity=30.7692307692308, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI48994943, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1788506, Length=190, Percent_Identity=31.0526315789474, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790162, Length=207, Percent_Identity=29.4685990338164, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787164, Length=196, Percent_Identity=33.6734693877551, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790739, Length=203, Percent_Identity=31.5270935960591, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI48994883, Length=194, Percent_Identity=29.3814432989691, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787500, Length=195, Percent_Identity=28.2051282051282, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787089, Length=193, Percent_Identity=32.6424870466321, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693107, Length=216, Percent_Identity=30.5555555555556, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787112, Length=213, Percent_Identity=30.5164319248826, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789586, Length=201, Percent_Identity=30.3482587064677, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787105, Length=220, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789864, Length=184, Percent_Identity=29.3478260869565, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786319, Length=187, Percent_Identity=28.8770053475936, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789891, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788165, Length=201, Percent_Identity=30.3482587064677, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87081782, Length=178, Percent_Identity=31.4606741573034, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789963, Length=194, Percent_Identity=28.8659793814433, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787792, Length=202, Percent_Identity=25.7425742574257, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48995001, Length=205, Percent_Identity=29.7560975609756, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788210, Length=208, Percent_Identity=28.3653846153846, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787143, Length=174, Percent_Identity=32.183908045977, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787758, Length=186, Percent_Identity=26.3440860215054, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994997, Length=206, Percent_Identity=28.1553398058252, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786803, Length=184, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786345, Length=201, Percent_Identity=29.3532338308458, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786653, Length=172, Percent_Identity=29.0697674418605, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786981, Length=182, Percent_Identity=28.021978021978, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1787759, Length=194, Percent_Identity=27.319587628866, Blast_Score=60, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=165, Percent_Identity=36.3636363636364, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI193211017, Length=165, Percent_Identity=36.3636363636364, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI193211015, Length=165, Percent_Identity=36.3636363636364, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17541710, Length=166, Percent_Identity=36.144578313253, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17567269, Length=173, Percent_Identity=34.6820809248555, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71984940, Length=161, Percent_Identity=34.7826086956522, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=180, Percent_Identity=32.2222222222222, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=174, Percent_Identity=32.7586206896552, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=173, Percent_Identity=33.5260115606936, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=164, Percent_Identity=33.5365853658537, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=173, Percent_Identity=31.7919075144509, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=169, Percent_Identity=31.9526627218935, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=163, Percent_Identity=33.7423312883436, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=220, Percent_Identity=26.3636363636364, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322640, Length=225, Percent_Identity=28.8888888888889, Blast_Score=66, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6323217, Length=174, Percent_Identity=32.7586206896552, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24659289, Length=178, Percent_Identity=34.8314606741573, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI19920532, Length=167, Percent_Identity=34.7305389221557, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24580930, Length=167, Percent_Identity=34.7305389221557, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI281363262, Length=162, Percent_Identity=32.7160493827161, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24653245, Length=162, Percent_Identity=32.7160493827161, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45552437, Length=187, Percent_Identity=34.2245989304813, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24585557, Length=187, Percent_Identity=34.2245989304813, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI85726357, Length=173, Percent_Identity=31.2138728323699, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI17647959, Length=161, Percent_Identity=32.2981366459627, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21357907, Length=212, Percent_Identity=29.7169811320755, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161076684, Length=154, Percent_Identity=30.5194805194805, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581617, Length=154, Percent_Identity=30.5194805194805, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581615, Length=154, Percent_Identity=30.5194805194805, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI161076682, Length=154, Percent_Identity=30.5194805194805, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI85725262, Length=207, Percent_Identity=27.0531400966184, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574533, Length=158, Percent_Identity=32.9113924050633, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24104; Mature: 24104

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCVKNVSLRLPESRLLTNVNFSVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE
CEEECCCCEECCHHHHHEECCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPETFKGNARRNAVNDALER
EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHHH
SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRHWVFSEI
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCHHHHHHHHH
RAMAIPVVQVTHDLQDVPPDSPVLDMAQWSENYNKLR
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLCVKNVSLRLPESRLLTNVNFSVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE
CEEECCCCEECCHHHHHEECCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPETFKGNARRNAVNDALER
EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCHHHHHHHHHHH
SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRHWVFSEI
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCHHHHHHHHH
RAMAIPVVQVTHDLQDVPPDSPVLDMAQWSENYNKLR
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]