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The map label for this gene is nmpC [H]

Identifier: 218689242

GI number: 218689242

Start: 1427151

End: 1428314

Strand: Direct

Name: nmpC [H]

Synonym: ECED1_1456

Alternate gene names: 218689242

Gene position: 1427151-1428314 (Clockwise)

Preceding gene: 218689241

Following gene: 218689243

Centisome position: 27.39

GC content: 43.64

Gene sequence:

>1164_bases
ATGAAAAAAATGACAGTGGCACTTTCAGCTGTGGCAGCAGCTGTAATTTTTGCAGCGGGGGCGCAGGCTGCAGAAGTATA
CAATAAAGATGGCAATAAACTTGATGTGTATGGGCGTGCAACTGCACTCCATTATTTCTCCAGTGATAAGGGGGATGATG
GAGATAAGACATACGCACGTCTGGGCTTTAAAGGTGAAACTCAGATTAATGACCAGTTGACTGGTTTTGGTCAGTGGGAA
TATCAGTTCTCTGGTAATAAAGCTGAATCAGAGGGTGCTGCGGGTAATAAAACCCGTCTTGCATTTGCAGGTCTGAAGTT
TGGTGAGTTTGGCACCATTGATTATGGTCGTAACTATGGTATTGCGTACGATGTTGGTTCTTATACTGACGTATTACCAG
AGTTTGGCGGTGATGGCTGGACCCAGACCGATAACTTCATGACAGCCCGTACTTCCGGGGTATTAACCTATCGTAATACA
GATTTCTTTGGGCTTGTCGATGGCCTGAATTTTGCGGCACAGTACCAGGGTAAAAATGATCGGGGTGATCTCCGGAAAGC
TAATGGTGATGGTCACGGTTTCTCAGCCAGTTATGAATATGAAGGTTTTGGTATCGTTGCCGCATATATTAATGCGGACC
GAACCAATAATCAGGAAAAAGGTCTGAATGGTACTCTGACGATTGAACAAACTGATCCTTTAACCGGTAAAGTGACTGAA
AAGCAGATCGTTGTTGATTCCGGTAGTGTTGCAAAAGGTAAACACGCTGAGATGTGGGGAGTCGGACTAAAATACGATGC
TGACAACCTTTACCTGGCTACAACATATTCCGAAACTCAGAATCTGACGACCTTTGGTGATAAAGGAGTTGCAGATAAAG
CGCAAAACTTTGAAGCGGTACTGCAGTATCAGTTTGATTTCGGTCTGCGTCCATCTCTGGCATTCCTGCAGTCTCGTGCT
CAGGATGTCATTGTAGGTGGTAAAAACTATGGTGACCAGGATTTGGTTAAGTATGTTGACGTAGGTGCGAAATATTACTT
CAATAAAAATATGTCCACCTATGTTGATTATAAAATCAATCTGGTTGATGAGAATAAGTTTACCAGGGATGCGGGCATTG
CAACGGATGATATCGTTGCTGTTGGTATGACTTATCAGTTCTGA

Upstream 100 bases:

>100_bases
ACAAAATAAAAATTGAACCCGTAATTTAATTTACAATATTTTGAGTTTTGTTCATGACATCTCTATGCATGAATAGTTCA
GTTTAAATAAGGATTAAATC

Downstream 100 bases:

>100_bases
TGATTACTGGTAAATAAATACAGGCCATCTGCCCTCACAGATGGCCTGTATCAGTGGAAGTTATATTTCCACTGGTCACT
GCGATCAGCTATTAGCTGAT

Product: outer membrane porin protein from phage origin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MKKMTVALSAVAAAVIFAAGAQAAEVYNKDGNKLDVYGRATALHYFSSDKGDDGDKTYARLGFKGETQINDQLTGFGQWE
YQFSGNKAESEGAAGNKTRLAFAGLKFGEFGTIDYGRNYGIAYDVGSYTDVLPEFGGDGWTQTDNFMTARTSGVLTYRNT
DFFGLVDGLNFAAQYQGKNDRGDLRKANGDGHGFSASYEYEGFGIVAAYINADRTNNQEKGLNGTLTIEQTDPLTGKVTE
KQIVVDSGSVAKGKHAEMWGVGLKYDADNLYLATTYSETQNLTTFGDKGVADKAQNFEAVLQYQFDFGLRPSLAFLQSRA
QDVIVGGKNYGDQDLVKYVDVGAKYYFNKNMSTYVDYKINLVDENKFTRDAGIATDDIVAVGMTYQF

Sequences:

>Translated_387_residues
MKKMTVALSAVAAAVIFAAGAQAAEVYNKDGNKLDVYGRATALHYFSSDKGDDGDKTYARLGFKGETQINDQLTGFGQWE
YQFSGNKAESEGAAGNKTRLAFAGLKFGEFGTIDYGRNYGIAYDVGSYTDVLPEFGGDGWTQTDNFMTARTSGVLTYRNT
DFFGLVDGLNFAAQYQGKNDRGDLRKANGDGHGFSASYEYEGFGIVAAYINADRTNNQEKGLNGTLTIEQTDPLTGKVTE
KQIVVDSGSVAKGKHAEMWGVGLKYDADNLYLATTYSETQNLTTFGDKGVADKAQNFEAVLQYQFDFGLRPSLAFLQSRA
QDVIVGGKNYGDQDLVKYVDVGAKYYFNKNMSTYVDYKINLVDENKFTRDAGIATDDIVAVGMTYQF
>Mature_387_residues
MKKMTVALSAVAAAVIFAAGAQAAEVYNKDGNKLDVYGRATALHYFSSDKGDDGDKTYARLGFKGETQINDQLTGFGQWE
YQFSGNKAESEGAAGNKTRLAFAGLKFGEFGTIDYGRNYGIAYDVGSYTDVLPEFGGDGWTQTDNFMTARTSGVLTYRNT
DFFGLVDGLNFAAQYQGKNDRGDLRKANGDGHGFSASYEYEGFGIVAAYINADRTNNQEKGLNGTLTIEQTDPLTGKVTE
KQIVVDSGSVAKGKHAEMWGVGLKYDADNLYLATTYSETQNLTTFGDKGVADKAQNFEAVLQYQFDFGLRPSLAFLQSRA
QDVIVGGKNYGDQDLVKYVDVGAKYYFNKNMSTYVDYKINLVDENKFTRDAGIATDDIVAVGMTYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein. Note=When expressed in mutant CS384 [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=395, Percent_Identity=56.7088607594937, Blast_Score=414, Evalue=1e-117,
Organism=Escherichia coli, GI1786436, Length=390, Percent_Identity=56.6666666666667, Blast_Score=411, Evalue=1e-116,
Organism=Escherichia coli, GI1787641, Length=383, Percent_Identity=55.8746736292428, Blast_Score=394, Evalue=1e-111,
Organism=Escherichia coli, GI1787160, Length=399, Percent_Identity=54.8872180451128, Blast_Score=392, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 42303; Mature: 42303

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00576 GRAM_NEG_PORIN ; PS00327 BACTERIAL_OPSIN_RET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMTVALSAVAAAVIFAAGAQAAEVYNKDGNKLDVYGRATALHYFSSDKGDDGDKTYAR
CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEE
LGFKGETQINDQLTGFGQWEYQFSGNKAESEGAAGNKTRLAFAGLKFGEFGTIDYGRNYG
ECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCCC
IAYDVGSYTDVLPEFGGDGWTQTDNFMTARTSGVLTYRNTDFFGLVDGLNFAAQYQGKND
EEEECCCHHHHHHHHCCCCCCCCCCEEEEECCEEEEEECCCEEEEECCCCEEEEECCCCC
RGDLRKANGDGHGFSASYEYEGFGIVAAYINADRTNNQEKGLNGTLTIEQTDPLTGKVTE
CCCCEECCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEC
KQIVVDSGSVAKGKHAEMWGVGLKYDADNLYLATTYSETQNLTTFGDKGVADKAQNFEAV
EEEEEECCCCCCCCCCEEEECCEEECCCCEEEEEEECCCCCCEECCCCCCCHHHHCCEEE
LQYQFDFGLRPSLAFLQSRAQDVIVGGKNYGDQDLVKYVDVGAKYYFNKNMSTYVDYKIN
EEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCCCEEEEEEEE
LVDENKFTRDAGIATDDIVAVGMTYQF
EEECCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKKMTVALSAVAAAVIFAAGAQAAEVYNKDGNKLDVYGRATALHYFSSDKGDDGDKTYAR
CCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEE
LGFKGETQINDQLTGFGQWEYQFSGNKAESEGAAGNKTRLAFAGLKFGEFGTIDYGRNYG
ECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCCC
IAYDVGSYTDVLPEFGGDGWTQTDNFMTARTSGVLTYRNTDFFGLVDGLNFAAQYQGKND
EEEECCCHHHHHHHHCCCCCCCCCCEEEEECCEEEEEECCCEEEEECCCCEEEEECCCCC
RGDLRKANGDGHGFSASYEYEGFGIVAAYINADRTNNQEKGLNGTLTIEQTDPLTGKVTE
CCCCEECCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEC
KQIVVDSGSVAKGKHAEMWGVGLKYDADNLYLATTYSETQNLTTFGDKGVADKAQNFEAV
EEEEEECCCCCCCCCCEEEECCEEECCCCEEEEEEECCCCCCEECCCCCCCHHHHCCEEE
LQYQFDFGLRPSLAFLQSRAQDVIVGGKNYGDQDLVKYVDVGAKYYFNKNMSTYVDYKIN
EEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCCCEEEEEEEE
LVDENKFTRDAGIATDDIVAVGMTYQF
EEECCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3017988; 9278503; 8057841; 8648624 [H]