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The map label for this gene is ytfH [H]

Identifier: 218551489

GI number: 218551489

Start: 4375975

End: 4376355

Strand: Direct

Name: ytfH [H]

Synonym: EFER_4272

Alternate gene names: 218551489

Gene position: 4375975-4376355 (Clockwise)

Preceding gene: 218551485

Following gene: 218551491

Centisome position: 95.36

GC content: 56.96

Gene sequence:

>381_bases
ATGAGTCAGGTTAGCCTGTCGCAACAACTGAAAGAGGGTAACCTCTTCGCCGAACAGTGCCCGTCGCGCGAGGTGTTGAA
ACACGTCACCAGCCGTTGGGGGGTATTGATTCTGGTCGCGCTTCGCGAAGGTACGCACCGTTTTAGCGACCTGCGCCGCA
AGATGGGTGGGGTGAGTGAAAAGATGCTTGCGCAGTCGTTACAGGCGTTAGAGCAGGATGGGTTTCTTAACCGTATCTCT
TATCCGGTGGTGCCGCCGCATGTGGAATACAGCCTCACGCCGCTGGGCGAGCAGGTGAGCGAAAAGGTTGCTGCACTGGC
GGACTGGATTGAGTTGAATTTGCCTGAGGTGCTGGCAGTGCGGGATGAACGTGCGGCATAA

Upstream 100 bases:

>100_bases
AATTGCGATCATGGGAAGCCTCCATCGGTTTGTCTTGTGTTTAAATACGCTACCACCTAAACTTACTTTTAGTAAGTACG
TACAAAAAGGTAAGTATGAA

Downstream 100 bases:

>100_bases
CAGCCGGATGCGCTGCGCTTATCCGGCCTACGGTTCATGACTTGTAGGGCGGATAAGATGCGACAGCATCGCATCCGCCA
ATAAATGCCGGATGCGGTTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRIS
YPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAVRDERAA

Sequences:

>Translated_126_residues
MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRIS
YPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAVRDERAA
>Mature_125_residues
SQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRISY
PVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAVRDERAA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=126, Percent_Identity=98.4126984126984, Blast_Score=254, Evalue=2e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14109; Mature: 13978

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKMGGVSE
CCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHH
KMLAQSLQALEQDGFLNRISYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAV
HHHHHHHHHHHHCCCHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHHH
RDERAA
CCCCCC
>Mature Secondary Structure 
SQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKMGGVSE
CCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHH
KMLAQSLQALEQDGFLNRISYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAV
HHHHHHHHHHHHCCCHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCCCHHHHHH
RDERAA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]