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The map label for this gene is ubiC [H]

Identifier: 218551351

GI number: 218551351

Start: 4230469

End: 4231131

Strand: Direct

Name: ubiC [H]

Synonym: EFER_4130

Alternate gene names: 218551351

Gene position: 4230469-4231131 (Clockwise)

Preceding gene: 218551350

Following gene: 218551352

Centisome position: 92.19

GC content: 49.47

Gene sequence:

>663_bases
GTGCTGATTTTGCAACAACTGGTGCGTCTTCTGGCGCACCTTTTTTTATCATTTTTTGCGATTGTTGCGTTTTTGTTGCG
CAATAGATCACTTAATTTTGTTTCCTTCTCCCGTAATCTCTTTTCTGCGATACAATGCCTTCACGTTATAGAACGGAGAG
TTCGCATGTCACATCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTTTGCTGAGATTCCGGCGCTTGATCCCGCACAA
CTCGACTGGTTATTACTGGAAGATTCCATGACCAAACGTTTTGAGCAGCAGGGAAAAAAGGTGAGCGTGACAGTAATCCG
CGAAGGCTTTGTCGGGCAACAAGATGTTGCCCTGGAGTTATCGCAGTTGCCGCAAGAGCCTCGCTACTGGCTGCGGGAAA
TTTTACTTTGCGCAGATGGTGAACCCTGGCTTGCGGGGCGCACTGTGGTGCCAGAATCAACGTTATCTGGCCCTGAACTG
GCATTACAAAAACTGGGTAAGACCCCGTTGGGGCGCTACCTGTTTACATCATCAACGTTGAGCCGTGATTTTATTGAGAT
TGGTCGTGATGCAGAGCTATGGGGGCGGCGTTCACGTCTGCGGTTAAGCGGTAAGCCCCTGATGCTTACTGAACTGTTTT
TGCCTGCATCACCGTTGTACTAA

Upstream 100 bases:

>100_bases
AGCGCTGAAACTGCTTGATGAAGCTGAACGTCTGGGCTCGACCTCTGCCCGTTCCACTTTTATCAGCAGTGTAAAAGGCA
AGGGGTAACCACTCCCCGCA

Downstream 100 bases:

>100_bases
GAGGAAATAAAGATGGAGTGGAGTCTGACGCAGAATAAGCTGTTGGCGTTTCACCGCTTAATGCGTACGGATAAGCCAAT
TGGCGCGTTACTACTGCTCT

Product: chorismate pyruvate lyase

Products: NA

Alternate protein names: CL; CPL [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLILQQLVRLLAHLFLSFFAIVAFLLRNRSLNFVSFSRNLFSAIQCLHVIERRVRMSHPALTQLRALRYFAEIPALDPAQ
LDWLLLEDSMTKRFEQQGKKVSVTVIREGFVGQQDVALELSQLPQEPRYWLREILLCADGEPWLAGRTVVPESTLSGPEL
ALQKLGKTPLGRYLFTSSTLSRDFIEIGRDAELWGRRSRLRLSGKPLMLTELFLPASPLY

Sequences:

>Translated_220_residues
MLILQQLVRLLAHLFLSFFAIVAFLLRNRSLNFVSFSRNLFSAIQCLHVIERRVRMSHPALTQLRALRYFAEIPALDPAQ
LDWLLLEDSMTKRFEQQGKKVSVTVIREGFVGQQDVALELSQLPQEPRYWLREILLCADGEPWLAGRTVVPESTLSGPEL
ALQKLGKTPLGRYLFTSSTLSRDFIEIGRDAELWGRRSRLRLSGKPLMLTELFLPASPLY
>Mature_220_residues
MLILQQLVRLLAHLFLSFFAIVAFLLRNRSLNFVSFSRNLFSAIQCLHVIERRVRMSHPALTQLRALRYFAEIPALDPAQ
LDWLLLEDSMTKRFEQQGKKVSVTVIREGFVGQQDVALELSQLPQEPRYWLREILLCADGEPWLAGRTVVPESTLSGPEL
ALQKLGKTPLGRYLFTSSTLSRDFIEIGRDAELWGRRSRLRLSGKPLMLTELFLPASPLY

Specific function: Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway [H]

COG id: COG3161

COG function: function code H; 4-hydroxybenzoate synthetase (chorismate lyase)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiC family [H]

Homologues:

Organism=Escherichia coli, GI87082361, Length=165, Percent_Identity=87.8787878787879, Blast_Score=289, Evalue=9e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007440 [H]

Pfam domain/function: PF04345 Chor_lyase [H]

EC number: =4.1.3.40 [H]

Molecular weight: Translated: 25224; Mature: 25224

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILQQLVRLLAHLFLSFFAIVAFLLRNRSLNFVSFSRNLFSAIQCLHVIERRVRMSHPA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LTQLRALRYFAEIPALDPAQLDWLLLEDSMTKRFEQQGKKVSVTVIREGFVGQQDVALEL
HHHHHHHHHHHHCCCCCCHHHHHEEHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHH
SQLPQEPRYWLREILLCADGEPWLAGRTVVPESTLSGPELALQKLGKTPLGRYLFTSSTL
HHCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
SRDFIEIGRDAELWGRRSRLRLSGKPLMLTELFLPASPLY
HHHHHHHCCCHHHHCCCHHEEECCCCEEHHHHHCCCCCCC
>Mature Secondary Structure
MLILQQLVRLLAHLFLSFFAIVAFLLRNRSLNFVSFSRNLFSAIQCLHVIERRVRMSHPA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LTQLRALRYFAEIPALDPAQLDWLLLEDSMTKRFEQQGKKVSVTVIREGFVGQQDVALEL
HHHHHHHHHHHHCCCCCCHHHHHEEHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHH
SQLPQEPRYWLREILLCADGEPWLAGRTVVPESTLSGPELALQKLGKTPLGRYLFTSSTL
HHCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
SRDFIEIGRDAELWGRRSRLRLSGKPLMLTELFLPASPLY
HHHHHHHCCCHHHHCCCHHEEECCCCEEHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA