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The map label for this gene is yihD

Identifier: 218550902

GI number: 218550902

Start: 3710714

End: 3710983

Strand: Reverse

Name: yihD

Synonym: EFER_3618

Alternate gene names: 218550902

Gene position: 3710983-3710714 (Counterclockwise)

Preceding gene: 218550905

Following gene: 218550901

Centisome position: 80.87

GC content: 44.81

Gene sequence:

>270_bases
ATGAAATGTAAACGTCTGAATGAAGTTATTGAACTCCTCCAGCCAGCCTGGCAAAAAGAACCAGACCTTAACCTGCTGCA
ATTTTTGCAGAAACTGGCGAAAGAGTCAGGTTTTGACGGCGAACTGGCGGATTTGACGGATGACATTCTGATCTATCACC
TGAAAATGCGTGATTCCGCGAAAGATGCGGTGATCCCGGGTTTGCAGAAAGATTATGAAGAAGATTTCAAAACGGCGCTA
TTACGCGCACGTGGCGTAATTAAAGAGTAA

Upstream 100 bases:

>100_bases
CAACGCCTGTTATCGTCGTCATCAGATTGACCGATATCGCCTCTTTTATTGTGGGATTGACCCTGCTAACGTGTCTGTCT
CAAGAGTAAGGAGCATCACT

Downstream 100 bases:

>100_bases
AAGCTTGTAAGCGGCGCAACCAAAATCATCGTGAAATGATATCCTTCATCATTCGTAATGTTTTCCGGATGATGGGATGA
ACAACAGCGCTTTTACTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTAL
LRARGVIKE

Sequences:

>Translated_89_residues
MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTAL
LRARGVIKE
>Mature_89_residues
MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTAL
LRARGVIKE

Specific function: Unknown

COG id: COG3084

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0845

Homologues:

Organism=Escherichia coli, GI1790289, Length=89, Percent_Identity=100, Blast_Score=180, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIHD_ECO57 (P0ADQ1)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C86073
- PIR:   E91226
- RefSeq:   NP_290483.1
- RefSeq:   NP_312808.1
- ProteinModelPortal:   P0ADQ1
- EnsemblBacteria:   EBESCT00000023869
- EnsemblBacteria:   EBESCT00000056817
- GeneID:   915116
- GeneID:   960302
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z5390
- KEGG:   ecs:ECs4781
- GeneTree:   EBGT00050000011552
- HOGENOM:   HBG297175
- OMA:   CHRIEEL
- ProtClustDB:   CLSK870621
- BioCyc:   ECOL83334:ECS4781-MONOMER
- InterPro:   IPR009383
- ProDom:   PD029038

Pfam domain/function: PF06288 DUF1040

EC number: NA

Molecular weight: Translated: 10273; Mature: 10273

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
KDAVIPGLQKDYEEDFKTALLRARGVIKE
CHHHCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSA
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
KDAVIPGLQKDYEEDFKTALLRARGVIKE
CHHHCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796