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The map label for this gene is xylR [H]

Identifier: 218550851

GI number: 218550851

Start: 3650444

End: 3651718

Strand: Direct

Name: xylR [H]

Synonym: EFER_3567

Alternate gene names: 218550851

Gene position: 3650444-3651718 (Clockwise)

Preceding gene: 218550847

Following gene: 218550853

Centisome position: 79.55

GC content: 46.75

Gene sequence:

>1275_bases
TTGCTTTCCAGTTTTGAGTATGGTGAATTCGCAATGCATCATCGTAGTGATAATATCATTTCGCCCATATTTAGCCGTGC
AGGATATGTTCACATGTTTGATAAACGTCACCGTATCACTCTGTTATTTAATGCCAATAAAGCCTACGACCGGCAGGTTG
TTGAAGGCGTGGGAGAATATTTACAGGCATCACAATCAGAATGGGACATATTCATTGAAGAGGATTTTCGGGCCCGGATT
GATAACATTAAAGACTGGCTCGGCGATGGCGTAATAGCGGATTACGACGATGAAGAAATTGAACACTTACTGGCCGATGT
TCATGTTCCCATTGTCGGCGTTGGTGGTTCTTACCATCTGGCAGAAAATTATCCTTATGTACATTATGTCGCCACAGATA
ACCATGCATTGGTTGAAAGCGCCTTTTTGCATTTAAAAGAAAAAGGGATCAATCGTTTTGCTTTCTATGGTTTGCCTGCT
GCCAGTGGCAAACGCTGGGCTGCCGAGCGAGAACATGCCTTCCGCCAGTTGGTTGCGAAAGAAAAATATCGTGGAGTGGT
GTATCAGGGCCTACAAACCGCACCAGAAAACTGGCAACACGCCCAGAACAGACTGGCGGACTGGTTACAAACTTTGCCGC
CGCAAACAGGCATAATTGCCGTCACAGATTCCCGCGCCCGACATATCCTGCAAGCTTGTGAGCATCTGCATATCCCGGTG
CCAGAAAAATTAAGTGTTATTGGGATCGATAACGAAGAACTGACGCGCTACTTATCGCGTGTGGCACTCTCCTCCGTGGC
TCAGGGAGCGCGGCAAATGGGCTATCAGGCGGCAAAATTGCTACATCGCTTGCTGAACAAAGAAGAACTGCCGTTACAGC
GAATCCTTGTTCCTCCTGTTCGTGTCATTGAGCGCCGTTCCACTGACTATCGTTCCCTGACCGATCCCGCTGTTATTCAG
GCGATGCACTTTATTCGTAATCATGCCTGCAAAGGGATAAAGGTTGATCAGGTGCTTGATTCTGTGGGAATTTCTCGCTC
AAACCTGGAGAAGCGCTTTAAAGAGGAAGTGGGCGAAACCATTCATGCCGTCATTCACGCTGAAAAACTGGAGAAAGCAC
GTAGCCTGTTGGTCTCTACCACATTGTCGATCAACGAAATTTCGCAGATGTGTGGCTATCCTTCACTACAGTATTTCTAT
TCAGTGTTTAAAAAAGAGTACGACACGACACCCAAAGAGTATCGCGATCGGCATAGTGAAGTGTTGGTGATTTAA

Upstream 100 bases:

>100_bases
AATTGTGCGCTGGCTCGCAAAAACAACAAATTAAAAGCTGATCGCTGTCGAATATTAAAAAATAAACAAAAAACCATAAC
CCGAAGATAAAAAATGGGAA

Downstream 100 bases:

>100_bases
AAGATACAAAAAAGCCGGAGAGCGCATTGAGCGTGTTCTTCCGGCTTTTAGGGTTACATATGTGCGGCAATTAAGCGCTG
GTTATCCTGGTACATCGCGT

Product: DNA-binding transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MLSSFEYGEFAMHHRSDNIISPIFSRAGYVHMFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARI
DNIKDWLGDGVIADYDDEEIEHLLADVHVPIVGVGGSYHLAENYPYVHYVATDNHALVESAFLHLKEKGINRFAFYGLPA
ASGKRWAAEREHAFRQLVAKEKYRGVVYQGLQTAPENWQHAQNRLADWLQTLPPQTGIIAVTDSRARHILQACEHLHIPV
PEKLSVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLNKEELPLQRILVPPVRVIERRSTDYRSLTDPAVIQ
AMHFIRNHACKGIKVDQVLDSVGISRSNLEKRFKEEVGETIHAVIHAEKLEKARSLLVSTTLSINEISQMCGYPSLQYFY
SVFKKEYDTTPKEYRDRHSEVLVI

Sequences:

>Translated_424_residues
MLSSFEYGEFAMHHRSDNIISPIFSRAGYVHMFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARI
DNIKDWLGDGVIADYDDEEIEHLLADVHVPIVGVGGSYHLAENYPYVHYVATDNHALVESAFLHLKEKGINRFAFYGLPA
ASGKRWAAEREHAFRQLVAKEKYRGVVYQGLQTAPENWQHAQNRLADWLQTLPPQTGIIAVTDSRARHILQACEHLHIPV
PEKLSVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLNKEELPLQRILVPPVRVIERRSTDYRSLTDPAVIQ
AMHFIRNHACKGIKVDQVLDSVGISRSNLEKRFKEEVGETIHAVIHAEKLEKARSLLVSTTLSINEISQMCGYPSLQYFY
SVFKKEYDTTPKEYRDRHSEVLVI
>Mature_424_residues
MLSSFEYGEFAMHHRSDNIISPIFSRAGYVHMFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARI
DNIKDWLGDGVIADYDDEEIEHLLADVHVPIVGVGGSYHLAENYPYVHYVATDNHALVESAFLHLKEKGINRFAFYGLPA
ASGKRWAAEREHAFRQLVAKEKYRGVVYQGLQTAPENWQHAQNRLADWLQTLPPQTGIIAVTDSRARHILQACEHLHIPV
PEKLSVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLNKEELPLQRILVPPVRVIERRSTDYRSLTDPAVIQ
AMHFIRNHACKGIKVDQVLDSVGISRSNLEKRFKEEVGETIHAVIHAEKLEKARSLLVSTTLSINEISQMCGYPSLQYFY
SVFKKEYDTTPKEYRDRHSEVLVI

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=392, Percent_Identity=91.5816326530612, Blast_Score=756, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 48604; Mature: 48604

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSSFEYGEFAMHHRSDNIISPIFSRAGYVHMFDKRHRITLLFNANKAYDRQVVEGVGEY
CCCCCCCCHHHHHHCCCCHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHH
LQASQSEWDIFIEEDFRARIDNIKDWLGDGVIADYDDEEIEHLLADVHVPIVGVGGSYHL
HHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEECCCCEEE
AENYPYVHYVATDNHALVESAFLHLKEKGINRFAFYGLPAASGKRWAAEREHAFRQLVAK
CCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
EKYRGVVYQGLQTAPENWQHAQNRLADWLQTLPPQTGIIAVTDSRARHILQACEHLHIPV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCC
PEKLSVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLNKEELPLQRILVPPV
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHH
RVIERRSTDYRSLTDPAVIQAMHFIRNHACKGIKVDQVLDSVGISRSNLEKRFKEEVGET
HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
IHAVIHAEKLEKARSLLVSTTLSINEISQMCGYPSLQYFYSVFKKEYDTTPKEYRDRHSE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCCC
VLVI
EEEC
>Mature Secondary Structure
MLSSFEYGEFAMHHRSDNIISPIFSRAGYVHMFDKRHRITLLFNANKAYDRQVVEGVGEY
CCCCCCCCHHHHHHCCCCHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHH
LQASQSEWDIFIEEDFRARIDNIKDWLGDGVIADYDDEEIEHLLADVHVPIVGVGGSYHL
HHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEECCCCEEE
AENYPYVHYVATDNHALVESAFLHLKEKGINRFAFYGLPAASGKRWAAEREHAFRQLVAK
CCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
EKYRGVVYQGLQTAPENWQHAQNRLADWLQTLPPQTGIIAVTDSRARHILQACEHLHIPV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCCCC
PEKLSVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLNKEELPLQRILVPPV
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHH
RVIERRSTDYRSLTDPAVIQAMHFIRNHACKGIKVDQVLDSVGISRSNLEKRFKEEVGET
HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
IHAVIHAEKLEKARSLLVSTTLSINEISQMCGYPSLQYFYSVFKKEYDTTPKEYRDRHSE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCCC
VLVI
EEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]