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The map label for this gene is 218550368

Identifier: 218550368

GI number: 218550368

Start: 3135025

End: 3136254

Strand: Direct

Name: 218550368

Synonym: EFER_3060

Alternate gene names: NA

Gene position: 3135025-3136254 (Clockwise)

Preceding gene: 218550364

Following gene: 218550370

Centisome position: 68.32

GC content: 54.72

Gene sequence:

>1230_bases
GTGAATGTTATGAAATACCACTCTGAACCTCTGGTTCCCCATAAATCTGCCCTGATGCAAATGCCCGCAAATCTCCTTGC
CGAAGATGTCTGTTTACCTGCCGCAATCATTAAAAAGCAGGCCCTGGAGAACAACATTACGTGGATGCAGCGTTATGCTG
ACGCGCGCGGCGTTTCGCTGGCACCGCACGGTAAAACCACCATGACGCCGTGGATTTTTCAGGCGCAGCAGGCGGCAGGC
GCCTGGGCAATAGGTGTCGGTAGCGCATGGCAGGCTGATGCGGCAATGGCGAGCGGTATTCAGCGAGTGCTGATGGTTAA
CCAACTGGTCGGCAAGGCGAATATGCAGTTGATTGCCCAGTTGCAACAACATTACCCGACGGTCGATTTTATCTGCTGTA
TCGACAGCATTGAGAACGCCCGCGCTTTGTCTGCCTTTTTTGCCAGTCAGCAACAGACACTGAACGTGATGATTGAGCTG
GGTGTTCCCGGCGGGCGCTGTGGTTGCCGCTCAACGGATGCCGCACTGGCACTGGCTAAACAGGCGGCCCAATTACCGGG
GTTACGCCTGCGGGGGCTTGAGTTATATGAAGGCGTTTTACACGGTGACGATCCACAACCGCAGGTAGAAGCTCTGCTGC
GGGATGCCGCACAACTGGCCTGTGATATGGCAAGTCTGGTTGATGGCGAGTTTATTCTCACCGGAGCAGGCACGGTCTGG
TATGACGTGGTGTGCAATATCTGGCTGGCGGCAGAAAAGCCTGATAACTGCCGCATTGTTATTCGCCCAGGCTGCTACAT
CACTCACGACACCGGGATCTACGACGCGGCACAACAACAGTTGCTTGCCCGCGATCCTGTGGCCTGCGATCTGGCAGGCG
ATCTCACATCTGCGCTGGAACTGGTCGCCATGGTGCAATCGGTGCCGGAAGCTGATCGTGCGGTGGTAAATTTTGGTAAG
CGTGATTGCGCCTTCGACGCCGGACTGCCGCAACCAGTCGCCCACTACCGCAACGGCAAATCACTGGCATTTGATCCACA
GGCGATTCGCAGTACAGGTATTATGGATCAGCACTGCATGTTGCAACTGTCAGCTAATAGCGACGTGCAAGTGGGGGATA
TTCTGGTGTTTGGCACATCGCATCCGTGCCTGACCTTCGACAAATGGAAAGCGTTGTTATTGACTGATGACGACTACAAC
GTACTGGCAGAGCTGGATACATTGTTTTGA

Upstream 100 bases:

>100_bases
GATACTTTTATTCATAAATCATAAGATAAATAAACTAAATATTTATATTTCATTTAGTTACAAATGATACTCATATCCGA
TACGGTGAAAAACTTAAAAG

Downstream 100 bases:

>100_bases
TTTCTGCTCGCCATACTTCAAGTTGCATGTACTGCGACTCGAATTATTTAGAGGATCAATCCCGGAGAGATATCTCCGGG
ATACCGCTCTTACGCTTCCC

Product: aldolase or racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MNVMKYHSEPLVPHKSALMQMPANLLAEDVCLPAAIIKKQALENNITWMQRYADARGVSLAPHGKTTMTPWIFQAQQAAG
AWAIGVGSAWQADAAMASGIQRVLMVNQLVGKANMQLIAQLQQHYPTVDFICCIDSIENARALSAFFASQQQTLNVMIEL
GVPGGRCGCRSTDAALALAKQAAQLPGLRLRGLELYEGVLHGDDPQPQVEALLRDAAQLACDMASLVDGEFILTGAGTVW
YDVVCNIWLAAEKPDNCRIVIRPGCYITHDTGIYDAAQQQLLARDPVACDLAGDLTSALELVAMVQSVPEADRAVVNFGK
RDCAFDAGLPQPVAHYRNGKSLAFDPQAIRSTGIMDQHCMLQLSANSDVQVGDILVFGTSHPCLTFDKWKALLLTDDDYN
VLAELDTLF

Sequences:

>Translated_409_residues
MNVMKYHSEPLVPHKSALMQMPANLLAEDVCLPAAIIKKQALENNITWMQRYADARGVSLAPHGKTTMTPWIFQAQQAAG
AWAIGVGSAWQADAAMASGIQRVLMVNQLVGKANMQLIAQLQQHYPTVDFICCIDSIENARALSAFFASQQQTLNVMIEL
GVPGGRCGCRSTDAALALAKQAAQLPGLRLRGLELYEGVLHGDDPQPQVEALLRDAAQLACDMASLVDGEFILTGAGTVW
YDVVCNIWLAAEKPDNCRIVIRPGCYITHDTGIYDAAQQQLLARDPVACDLAGDLTSALELVAMVQSVPEADRAVVNFGK
RDCAFDAGLPQPVAHYRNGKSLAFDPQAIRSTGIMDQHCMLQLSANSDVQVGDILVFGTSHPCLTFDKWKALLLTDDDYN
VLAELDTLF
>Mature_409_residues
MNVMKYHSEPLVPHKSALMQMPANLLAEDVCLPAAIIKKQALENNITWMQRYADARGVSLAPHGKTTMTPWIFQAQQAAG
AWAIGVGSAWQADAAMASGIQRVLMVNQLVGKANMQLIAQLQQHYPTVDFICCIDSIENARALSAFFASQQQTLNVMIEL
GVPGGRCGCRSTDAALALAKQAAQLPGLRLRGLELYEGVLHGDDPQPQVEALLRDAAQLACDMASLVDGEFILTGAGTVW
YDVVCNIWLAAEKPDNCRIVIRPGCYITHDTGIYDAAQQQLLARDPVACDLAGDLTSALELVAMVQSVPEADRAVVNFGK
RDCAFDAGLPQPVAHYRNGKSLAFDPQAIRSTGIMDQHCMLQLSANSDVQVGDILVFGTSHPCLTFDKWKALLLTDDDYN
VLAELDTLF

Specific function: Catalyzes the reversible cleavage of D-theronine or D- allothreonine into glycine and acetaldehyde. Can also cleave D- beta-phenylserine, D-beta-hydroxy-alpha-aminovaleric acid, D-beta- 3,4-dihydroxyphenylserine and D-beta-3,4- methylenedioxyphenylserine

COG id: COG3616

COG function: function code E; Predicted amino acid aldolase or racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DSD1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: =4.1.2.42 [H]

Molecular weight: Translated: 44339; Mature: 44339

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVMKYHSEPLVPHKSALMQMPANLLAEDVCLPAAIIKKQALENNITWMQRYADARGVSL
CCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEE
APHGKTTMTPWIFQAQQAAGAWAIGVGSAWQADAAMASGIQRVLMVNQLVGKANMQLIAQ
CCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQQHYPTVDFICCIDSIENARALSAFFASQQQTLNVMIELGVPGGRCGCRSTDAALALAK
HHHHCCCEEEEEEHHHHCCHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCHHHHHHHHH
QAAQLPGLRLRGLELYEGVLHGDDPQPQVEALLRDAAQLACDMASLVDGEFILTGAGTVW
HHHHCCCCEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
YDVVCNIWLAAEKPDNCRIVIRPGCYITHDTGIYDAAQQQLLARDPVACDLAGDLTSALE
HHHHHHHEEEECCCCCCEEEECCCEEEEECCCCHHHHHHHHHHCCCCEEECHHHHHHHHH
LVAMVQSVPEADRAVVNFGKRDCAFDAGLPQPVAHYRNGKSLAFDPQAIRSTGIMDQHCM
HHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEEECHHHHHHCCCCCCCEE
LQLSANSDVQVGDILVFGTSHPCLTFDKWKALLLTDDDYNVLAELDTLF
EEECCCCCCEEEEEEEECCCCCCEECCCCEEEEEECCCCHHHHHHHHCC
>Mature Secondary Structure
MNVMKYHSEPLVPHKSALMQMPANLLAEDVCLPAAIIKKQALENNITWMQRYADARGVSL
CCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEE
APHGKTTMTPWIFQAQQAAGAWAIGVGSAWQADAAMASGIQRVLMVNQLVGKANMQLIAQ
CCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQQHYPTVDFICCIDSIENARALSAFFASQQQTLNVMIELGVPGGRCGCRSTDAALALAK
HHHHCCCEEEEEEHHHHCCHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCHHHHHHHHH
QAAQLPGLRLRGLELYEGVLHGDDPQPQVEALLRDAAQLACDMASLVDGEFILTGAGTVW
HHHHCCCCEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
YDVVCNIWLAAEKPDNCRIVIRPGCYITHDTGIYDAAQQQLLARDPVACDLAGDLTSALE
HHHHHHHEEEECCCCCCEEEECCCEEEEECCCCHHHHHHHHHHCCCCEEECHHHHHHHHH
LVAMVQSVPEADRAVVNFGKRDCAFDAGLPQPVAHYRNGKSLAFDPQAIRSTGIMDQHCM
HHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEEECHHHHHHCCCCCCCEE
LQLSANSDVQVGDILVFGTSHPCLTFDKWKALLLTDDDYNVLAELDTLF
EEECCCCCCEEEEEEEECCCCCCEECCCCEEEEEECCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9642221 [H]