Click here to switch to the map view.

The map label for this gene is epsD [H]

Identifier: 218550223

GI number: 218550223

Start: 2982961

End: 2985021

Strand: Direct

Name: epsD [H]

Synonym: EFER_2915

Alternate gene names: 218550223

Gene position: 2982961-2985021 (Clockwise)

Preceding gene: 218550222

Following gene: 218550224

Centisome position: 65.01

GC content: 54.63

Gene sequence:

>2061_bases
GTGTTTTGGCGTGATATTACGTTGTCGGTCTGGCGTAAGAAGACAACTGGCCTCAAAACAAAAAAGCGTTTACTGCCGCT
GGTGCTGGCAGCGGCATTATGCAGTTCACCGGTCTGGGCGGAAGAAGCCACTTTCACCGCTAATTTTAAAGATACAGACC
TGAAATCGTTCATCGAAACCGTCGGCGCTAACCTTAATAAAACTATCATTATGGGGCCGGGCGTACAGGGGAAAGTGAGT
ATTCGTACCATGACCCCACTCAATGAACGCCAGTATTACCAGTTATTCCTTAATCTGCTGGAAGCGCAGGGGTATGCCGT
CGTACCGATGGAAAACGACGTGCTGAAGGTGGTGAAATCCAGCGCCGCAAAAGTTGAGCCGCTGCCGCTGGTCGGTGAAG
GCAGCGACAACTACGCGGGCGATGAAATGGTCACTAAAGTAGTGCCGGTACGTAATGTGTCGGTACGCGAGCTGGCACCG
ATCCTGCGCCAGATGATCGACAGCGCAGGCTCAGGCAACGTTGTTAATTACGATCCCTCCAACGTAATTATGCTTACCGG
ACGCGCCTCCGTCGTGGAGCGCCTGACGGAAGTGATCCAGCGCGTGGATCATGCGGGAAACCGCACCGAAGAGGTGATCC
CGCTGGATAACGCCTCGGCCTCGGAAATTGCCCGCGTGCTGGAAAGCCTGACCAAAAACAGCGGCGAGAACCAGCCTGCG
ACGCTGAAATCTCAAATTGTCGCCGACGAACGCACCAACAGCGTGATTGTCAGTGGTGACCCTGCCACGCGAGACAAAAT
GCGCCGCCTGATCCGTCGGCTGGACTCAGAAATGGAGCGCAGCGGCAACAGCCAGGTGTTCTATCTCAAATACAGCAAAG
CCGAAGATCTGGTCGATGTGTTGAAACAGGTCAGCGGCACGCTCACAGCGGCTAAAGAAGAGGCGGAAGGCACGGTTGGT
AGCGGGCGTGAGGTTGTCTCCATCGCCGCCAGCAAACACAGTAATGCCCTGATTGTCACCGCGCCGCAGGACATTATGCA
GTCGCTGCAAAGCGTGATTGAACAACTGGATATTCGCCGTGCTCAGGTGCATGTCGAGGCGTTGATCGTGGAAGTTGCCG
AAGGCAGCAATATCAACTTCGGCGTGCAGTGGGCGTCGAAAGATGCCGGATTAATGCAGTTTGCTAACGGTACGCAGATC
CCTATCGGTACGCTGGGCGCAGCCATTTCTCAGGCGAAGCCACAGAAAGGTTCAACGGTGATCAGCGAAAACGGTGCCAC
CACCATTAATCCGGATACTAACGGCGATCTCTCCACGCTCGCCCAGCTTCTTTCTGGATTTAGCGGTACGGCGGTTGGCG
TGGTGAAAGGCGACTGGATGGCGCTGGTACAGGCGGTTAAAAACGACTCCAGCTCGAACGTTCTCTCCACGCCGAGCATC
ACTACGCTGGACAACCAGGAAGCCTTCTTCATGGTGGGCCAGGATGTTCCGGTATTAACCGGCTCTACCGTTGGCTCCAA
TAACAGCAATCCTTTCAATACAGTAGAAAGGAAAAAAGTCGGCATCATGCTGAAAGTCACGCCGCAGATTAACGAAGGAA
ACGCGGTACAGATGGTGATTGAGCAGGAAGTGTCGAAGGTGGAAGGACAGACCAGCCTCGACGTCGTGTTTGGCGAGCGC
AAACTGAAAACCACCGTGCTGGCAAACGATGGTGAGCTGATCGTGCTTGGCGGTCTGATGGACGATCAGGCGGGAGAAAG
CGTGGCGAAAGTGCCGCTGCTTGGCGATATCCCGTTGATTGGTAACCTGTTTAAATCGACGGCGGATAAAAAAGAAAAAC
GTAACCTGATGGTGTTTATCCGCCCGACCATTCTGCGTGATGGTATGGCGGCAGACGGCGTGTCGCAGCGCAAATATAAC
TATATGCGCGCCGAACAGATCTATCGCGATGAGCAAGGCTTAAGCCTGATGCCGCACACCGCGCAGCCGGTACTGCCAGC
GCAAAATCAGGCTCTACCGCCGGAAGTTCGTGCGTTCCTTAATGCCGGGAGAACGCGTTAA

Upstream 100 bases:

>100_bases
CAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCTACGACATTTCCATCGCGCTGCGCTAACCGCATTTA
ATCCAGGAGAATCATTCATC

Downstream 100 bases:

>100_bases
TGGTGCCTGTAGCACAGGAAACCACCGCCAACACCGTGCGTCTGCCCTACAGTTTCAGCCGTCGGTTTAGCCTGGTGGCA
TGGTGCGAAGCATCGCTGGA

Product: general secretion pathway protein D

Products: NA

Alternate protein names: Cholera toxin secretion protein epsD [H]

Number of amino acids: Translated: 686; Mature: 686

Protein sequence:

>686_residues
MFWRDITLSVWRKKTTGLKTKKRLLPLVLAAALCSSPVWAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVS
IRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAP
ILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVG
SGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQWASKDAGLMQFANGTQI
PIGTLGAAISQAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVVFGER
KLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYN
YMRAEQIYRDEQGLSLMPHTAQPVLPAQNQALPPEVRAFLNAGRTR

Sequences:

>Translated_686_residues
MFWRDITLSVWRKKTTGLKTKKRLLPLVLAAALCSSPVWAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVS
IRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAP
ILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVG
SGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQWASKDAGLMQFANGTQI
PIGTLGAAISQAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVVFGER
KLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYN
YMRAEQIYRDEQGLSLMPHTAQPVLPAQNQALPPEVRAFLNAGRTR
>Mature_686_residues
MFWRDITLSVWRKKTTGLKTKKRLLPLVLAAALCSSPVWAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVS
IRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAP
ILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVG
SGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQWASKDAGLMQFANGTQI
PIGTLGAAISQAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVVFGER
KLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYN
YMRAEQIYRDEQGLSLMPHTAQPVLPAQNQALPPEVRAFLNAGRTR

Specific function: Required for secretion of cholera toxin through the outer membrane [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=654, Percent_Identity=44.4954128440367, Blast_Score=531, Evalue=1e-152,
Organism=Escherichia coli, GI1789793, Length=307, Percent_Identity=24.7557003257329, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845
- InterPro:   IPR001814 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 74189; Mature: 74189

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFWRDITLSVWRKKTTGLKTKKRLLPLVLAAALCSSPVWAEEATFTANFKDTDLKSFIET
CCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
VGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKS
HCCCCCCEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
SAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPS
CCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCC
NVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
CEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDV
HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH
LKQVSGTLTAAKEEAEGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRR
HHHHHCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHH
AQVHVEALIVEVAEGSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTV
HHHEEEHHEEEECCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCEE
ISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
EECCCCEEECCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCEECCCCE
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVI
EEECCCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHEEEEEEECCCCCCCCEEEHHH
EQEVSKVEGQTSLDVVFGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLI
HHHHHHHCCCCEEEEEECCCEEEEEEEECCCCEEEECCCCCCCCCCCEEECCCCCCCCHH
GNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYNYMRAEQIYRDEQGLSLMPHT
HHHHHHHHCHHHCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCC
AQPVLPAQNQALPPEVRAFLNAGRTR
CCCCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MFWRDITLSVWRKKTTGLKTKKRLLPLVLAAALCSSPVWAEEATFTANFKDTDLKSFIET
CCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHH
VGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKS
HCCCCCCEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
SAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPS
CCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCC
NVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
CEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDV
HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH
LKQVSGTLTAAKEEAEGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRR
HHHHHCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHH
AQVHVEALIVEVAEGSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTV
HHHEEEHHEEEECCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCEE
ISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
EECCCCEEECCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCEECCCCE
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVI
EEECCCCEEEEECCCCCEEECCCCCCCCCCCCCHHHHHHEEEEEEECCCCCCCCEEEHHH
EQEVSKVEGQTSLDVVFGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLI
HHHHHHHCCCCEEEEEECCCEEEEEEEECCCCEEEECCCCCCCCCCCEEECCCCCCCCHH
GNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYNYMRAEQIYRDEQGLSLMPHT
HHHHHHHHCHHHCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCC
AQPVLPAQNQALPPEVRAFLNAGRTR
CCCCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]