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The map label for this gene is ygeR [H]

Identifier: 218550119

GI number: 218550119

Start: 2873586

End: 2874344

Strand: Reverse

Name: ygeR [H]

Synonym: EFER_2807

Alternate gene names: 218550119

Gene position: 2874344-2873586 (Counterclockwise)

Preceding gene: 218550120

Following gene: 218550118

Centisome position: 62.64

GC content: 52.7

Gene sequence:

>759_bases
TTGAGCGCAGGACGCTTGAATAAAAATAGCCTCGGAATTGCGCTGCTGTTGTCTATGGGGCTACTGCTGGCGGGCTGTTC
CAGCAAACCGTCATCCGATTCGGGAAGCTATTCTGGTACCGTTTACACTGTGAAGCGGGGAGATACGTTGTATCGTATTT
CACGCGCTACTGGCACCAGCGTAAAAGAACTCGCTCGTCTGAACGGCATTTCACCGCCTTATACTATTGAGGTTGGGCAA
AAACTGAAAGTGAGCAGTGGGTCGAAAAGCAGCAAAACTGCCAGTAAATCTGGCAAAAAATCGACCAGCAAAACTGCAGC
GGTCAGACCATCTTCTTCCGTTCCGCAATCTTCCTGGCCACCTGTTGGTCAACGCTGTTGGCGGTGGCCAGCCAGTGGGA
AGGTGATTTTGCCATACTCAATGGCGGATGGCGGAAATAAAGGCATCGACATCGCCGCGGCCCGAGGTACACCGGTTTAT
GCTGCCGGAGCCGGCAAGGTCGTGTATGCGGGTAACCAACTGCGTGGTTACGGTAATCTGGTGATGATAAAGCACAGTGA
AGATTACATTACTGCCTACGCCCATAACGACACTATTCTGGTCAATAATGGGGAGACGGTAAAAGCGGGCCAGAAAATCG
CCACCATGGGCAGTACTGACGCTGCCTCTGTACGGCTGCACTTCCAGATCCGTTACCGGGCAACTGCCATTGATCCGCTG
CGTTATCTCCCCCCGCAAGGCAGTAAACCGAAATGCTGA

Upstream 100 bases:

>100_bases
CGTCAGTGCTTGATTAACATGTTATGTCAGATGCAAGAGATTGGGCATCTTGCGGATGGCTGCTATCATAAAGCGACTTG
AAATATCGTGAGGATTCGCT

Downstream 100 bases:

>100_bases
CGGTGAAATAAACAGCAGTCAGTACAAAGCCACTTGCCAGCAAGAGCGTAAGGCTTATAATGCCTTACGCATCTCAAAGC
GGGCGTAGTTCAATGGTAGA

Product: Tetratricopeptide repeat transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSAGRLNKNSLGIALLLSMGLLLAGCSSKPSSDSGSYSGTVYTVKRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQ
KLKVSSGSKSSKTASKSGKKSTSKTAAVRPSSSVPQSSWPPVGQRCWRWPASGKVILPYSMADGGNKGIDIAAARGTPVY
AAGAGKVVYAGNQLRGYGNLVMIKHSEDYITAYAHNDTILVNNGETVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPL
RYLPPQGSKPKC

Sequences:

>Translated_252_residues
MSAGRLNKNSLGIALLLSMGLLLAGCSSKPSSDSGSYSGTVYTVKRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQ
KLKVSSGSKSSKTASKSGKKSTSKTAAVRPSSSVPQSSWPPVGQRCWRWPASGKVILPYSMADGGNKGIDIAAARGTPVY
AAGAGKVVYAGNQLRGYGNLVMIKHSEDYITAYAHNDTILVNNGETVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPL
RYLPPQGSKPKC
>Mature_251_residues
SAGRLNKNSLGIALLLSMGLLLAGCSSKPSSDSGSYSGTVYTVKRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQK
LKVSSGSKSSKTASKSGKKSTSKTAAVRPSSSVPQSSWPPVGQRCWRWPASGKVILPYSMADGGNKGIDIAAARGTPVYA
AGAGKVVYAGNQLRGYGNLVMIKHSEDYITAYAHNDTILVNNGETVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLR
YLPPQGSKPKC

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=252, Percent_Identity=84.5238095238095, Blast_Score=440, Evalue=1e-125,
Organism=Escherichia coli, GI1789099, Length=262, Percent_Identity=42.7480916030534, Blast_Score=204, Evalue=4e-54,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=35.2941176470588, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=37.5, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 26546; Mature: 26414

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGRLNKNSLGIALLLSMGLLLAGCSSKPSSDSGSYSGTVYTVKRGDTLYRISRATGTS
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCC
VKELARLNGISPPYTIEVGQKLKVSSGSKSSKTASKSGKKSTSKTAAVRPSSSVPQSSWP
HHHHHHHCCCCCCEEEECCCEEEECCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCCC
PVGQRCWRWPASGKVILPYSMADGGNKGIDIAAARGTPVYAAGAGKVVYAGNQLRGYGNL
CHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCCEEEEECCCEEEEECCEECCCCCE
VMIKHSEDYITAYAHNDTILVNNGETVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPL
EEEEECCCEEEEEECCCEEEEECCCEEECCCEEEECCCCCCEEEEEEEEEEEEEEEECCH
RYLPPQGSKPKC
HHCCCCCCCCCC
>Mature Secondary Structure 
SAGRLNKNSLGIALLLSMGLLLAGCSSKPSSDSGSYSGTVYTVKRGDTLYRISRATGTS
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCC
VKELARLNGISPPYTIEVGQKLKVSSGSKSSKTASKSGKKSTSKTAAVRPSSSVPQSSWP
HHHHHHHCCCCCCEEEECCCEEEECCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCCC
PVGQRCWRWPASGKVILPYSMADGGNKGIDIAAARGTPVYAAGAGKVVYAGNQLRGYGNL
CHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCCEEEEECCCEEEEECCEECCCCCE
VMIKHSEDYITAYAHNDTILVNNGETVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPL
EEEEECCCEEEEEECCCEEEEECCCEEECCCEEEECCCCCCEEEEEEEEEEEEEEEECCH
RYLPPQGSKPKC
HHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]