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The map label for this gene is yddB [H]

Identifier: 218548927

GI number: 218548927

Start: 1608123

End: 1610495

Strand: Direct

Name: yddB [H]

Synonym: EFER_1573

Alternate gene names: 218548927

Gene position: 1608123-1610495 (Clockwise)

Preceding gene: 218548926

Following gene: 218548928

Centisome position: 35.05

GC content: 44.33

Gene sequence:

>2373_bases
ATGAAACGAGTGCTTATTCCAGGCGTCATTTTATGTGGCGCCGATTTAGCCGTTGCCGCTGAGGATAACGAAAAATATAC
CCCTTTCTTCGAACAAATGACGGTATATGCCCCTGTGCCCGTGCCAGTAAATGGCAATACACATTACACAAGTGAAAGTA
TTGAACGATTACCCACGGGTAATGGCAACATTAGCGATTTGCTAAGAACTAACCCTGCGGTGCGTATGGATACCACCCAG
AGTACTTCTTTAAATCAGGGCGATATTCGCCCGGAAAAAATTTCAATTCATGGTGCTTCGCCCTATCAAAATGCTTATTT
GATTGATGGTGTAAGCGCCACAAACAACCTCAATCCAGCGAATGAATCTGATAGCAGTAACGCAACCAATATCAGTGGTA
TGTCGCAGGGATATTATCTTGATATCTCGTTACTGGATAATGTCACTGTTTATGACAGCTTTGTTCCGGTGGAGTTTGGT
CACTTCAATGGTGGCGTCATTGATGCCAAAATCAAACGTTTTAATGCTGATGACAACAGTATCAAACTGGGCTACCGCAC
GACGCGCTCAGACTGGATGACTTCGCATATTGATGAAAAAAACAAGAATGCCTGGAACCAGGGATCTTCAGGGAGTACTT
ATTACTCTCCTGAGTTCAAAAAGAACTTCTACAGCCTGTCATTTAACCAGGAGCTGACAGATAACTTCGGCGTAACCGCT
GGTTTCTCACGTCGTCAGTCGGATATTACCCGTGCAGATTATGTTTCCAACAACGGTATTGTTGAAGGCCGCGCACAGTA
TAAAAACCTGATTGATACCGCACTGAGTAAATTCTCCTGGTTTGCCAGTGATACGATTACCCACGATCTGACATTCAAAT
ATACTGAATCTCGTCGCGATTATAACACCAGTACCTTCCCGGAATCTGACCGTGAAATGGGTAACAAATCTTACGGTGTC
GCATGGGATATGGATTATCAGTTAGCAAAAGCGAAACTGCATACTACCCTCGGGTGGGATCATATTAGCGACTACACTCG
TCATGACCATGACATTTGGTATACCGAAGATGTATGTACATATGGTGATATTCGCGGTCGTTGTACCCGTGGTGGATTAG
GCCATATTTCTCAGGCCATAGACAACTACACCTTCAAAACGCGCCTTGACTGGCAAAAAATCGAGATCGGCAATTTCACA
CATCAACCTTATTTTGGTGCGGAATATATCTACTCTGATGCCTGGACGCAGCGACATAACCAGTCTGAGTCTTATCAAAT
TAAGTCTTCCGGGATTAAAACCAACCACACCATTTACCATAAAGGGAAAGGGAGTTTGGGAATCTATAACTACACCCTCT
ACCTGGCTGATCGTATGAGTTGGAAAAATATTTCCCTGATGCCTGGTCTACGTTACGACTACGATACTTACCTTAAGAAC
ACTAATATCTCACCACGTTTTATGACTGAGTGGGATATTTTTGCCGATCGGTCGTCACTCATTACTGCCGGTTATAACCG
CTATTATGGCGGTAATATTCTTGACATGGGGTTAAGGGATATCCGTAACAGTTGGACCGAATCGCTTTCCGGTAACAAAA
CGCTGACCCGTTATGAGGATCTCAAAACACCTTATAACGATGAACTGGCATTGGGATTACAGCAAAAAATTACCGATAAC
GTTATTGCCAGAGCAAACTACGTTTATCGTTCTGCCCATGACCAAATCAGCAAAACCAGCCATACCGATAGCGCAACAAA
GACGACAATTACCGAATATAACAATGACGGTACGACTAAAACGCACTCATTTAACCTGAGTTTTGAACTGGCCGAGCCTC
TTCAGGTCAGCCAGTTTGCGATCAACCCGCAAATTGTTTTCAGCTATATCAAAAGTAAGGGCAATCTACGACTAAACAGT
GGCTATGAAGAAACCAATACCGGCGACAATAAAGTCGTATACAACGGAAATCTGGTCTCTTATGACAGTGTACCGGTGGC
TGATTTTAATAACCCGCTGAAGATCTCGCTAAATATGGATTTCACCCACCAGCCTTCTGGCCTGGTATGGGCAAATACCC
TCACCTGGCAGGATGCACGGAAAGCTCGCATTCAGTTAGGCAAAACAAACTCGCAATATCAGAGTCAGTACGCTGATTAC
AAACAGTATGTTGATGAAAAACTGGATAGTAGCCTGAACTGGGATACCCGCATTTCCTGGACGCCTCAGTTCCTTAAAGC
CCAAAACCTGACGTTCAGTGCCGATATCCTCAACGTTTTGGATAGCAAAACTGCGGTCGATCTCTCAACAGCAGGCGTCT
CTACCTACGCCAGCGGTCGGCAGTTCTGGCTTGATGTCAGCATGAAATTTTAA

Upstream 100 bases:

>100_bases
GGTTTCTCATCAGCCGGGATTGTGGTCTCTGGCAGACGATATTTGTGACATTAGCGCGGCTTAATAATTATAACAAAAGC
CCGCAGAGGAGATTTTTTTA

Downstream 100 bases:

>100_bases
CCCTGAAAAATTGAGTTAGCCGGGTGGGATTTCCCTACCCGGCTTTTGTATGGAGAAAAAAATGAGGAAACTCTGTTACT
TACTGACCTTTGTCGCAACA

Product: porin protein

Products: NA

Alternate protein names: CDS103 [H]

Number of amino acids: Translated: 790; Mature: 790

Protein sequence:

>790_residues
MKRVLIPGVILCGADLAVAAEDNEKYTPFFEQMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDTTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGVSATNNLNPANESDSSNATNISGMSQGYYLDISLLDNVTVYDSFVPVEFG
HFNGGVIDAKIKRFNADDNSIKLGYRTTRSDWMTSHIDEKNKNAWNQGSSGSTYYSPEFKKNFYSLSFNQELTDNFGVTA
GFSRRQSDITRADYVSNNGIVEGRAQYKNLIDTALSKFSWFASDTITHDLTFKYTESRRDYNTSTFPESDREMGNKSYGV
AWDMDYQLAKAKLHTTLGWDHISDYTRHDHDIWYTEDVCTYGDIRGRCTRGGLGHISQAIDNYTFKTRLDWQKIEIGNFT
HQPYFGAEYIYSDAWTQRHNQSESYQIKSSGIKTNHTIYHKGKGSLGIYNYTLYLADRMSWKNISLMPGLRYDYDTYLKN
TNISPRFMTEWDIFADRSSLITAGYNRYYGGNILDMGLRDIRNSWTESLSGNKTLTRYEDLKTPYNDELALGLQQKITDN
VIARANYVYRSAHDQISKTSHTDSATKTTITEYNNDGTTKTHSFNLSFELAEPLQVSQFAINPQIVFSYIKSKGNLRLNS
GYEETNTGDNKVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLTWQDARKARIQLGKTNSQYQSQYADY
KQYVDEKLDSSLNWDTRISWTPQFLKAQNLTFSADILNVLDSKTAVDLSTAGVSTYASGRQFWLDVSMKF

Sequences:

>Translated_790_residues
MKRVLIPGVILCGADLAVAAEDNEKYTPFFEQMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDTTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGVSATNNLNPANESDSSNATNISGMSQGYYLDISLLDNVTVYDSFVPVEFG
HFNGGVIDAKIKRFNADDNSIKLGYRTTRSDWMTSHIDEKNKNAWNQGSSGSTYYSPEFKKNFYSLSFNQELTDNFGVTA
GFSRRQSDITRADYVSNNGIVEGRAQYKNLIDTALSKFSWFASDTITHDLTFKYTESRRDYNTSTFPESDREMGNKSYGV
AWDMDYQLAKAKLHTTLGWDHISDYTRHDHDIWYTEDVCTYGDIRGRCTRGGLGHISQAIDNYTFKTRLDWQKIEIGNFT
HQPYFGAEYIYSDAWTQRHNQSESYQIKSSGIKTNHTIYHKGKGSLGIYNYTLYLADRMSWKNISLMPGLRYDYDTYLKN
TNISPRFMTEWDIFADRSSLITAGYNRYYGGNILDMGLRDIRNSWTESLSGNKTLTRYEDLKTPYNDELALGLQQKITDN
VIARANYVYRSAHDQISKTSHTDSATKTTITEYNNDGTTKTHSFNLSFELAEPLQVSQFAINPQIVFSYIKSKGNLRLNS
GYEETNTGDNKVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLTWQDARKARIQLGKTNSQYQSQYADY
KQYVDEKLDSSLNWDTRISWTPQFLKAQNLTFSADILNVLDSKTAVDLSTAGVSTYASGRQFWLDVSMKF
>Mature_790_residues
MKRVLIPGVILCGADLAVAAEDNEKYTPFFEQMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDTTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGVSATNNLNPANESDSSNATNISGMSQGYYLDISLLDNVTVYDSFVPVEFG
HFNGGVIDAKIKRFNADDNSIKLGYRTTRSDWMTSHIDEKNKNAWNQGSSGSTYYSPEFKKNFYSLSFNQELTDNFGVTA
GFSRRQSDITRADYVSNNGIVEGRAQYKNLIDTALSKFSWFASDTITHDLTFKYTESRRDYNTSTFPESDREMGNKSYGV
AWDMDYQLAKAKLHTTLGWDHISDYTRHDHDIWYTEDVCTYGDIRGRCTRGGLGHISQAIDNYTFKTRLDWQKIEIGNFT
HQPYFGAEYIYSDAWTQRHNQSESYQIKSSGIKTNHTIYHKGKGSLGIYNYTLYLADRMSWKNISLMPGLRYDYDTYLKN
TNISPRFMTEWDIFADRSSLITAGYNRYYGGNILDMGLRDIRNSWTESLSGNKTLTRYEDLKTPYNDELALGLQQKITDN
VIARANYVYRSAHDQISKTSHTDSATKTTITEYNNDGTTKTHSFNLSFELAEPLQVSQFAINPQIVFSYIKSKGNLRLNS
GYEETNTGDNKVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLTWQDARKARIQLGKTNSQYQSQYADY
KQYVDEKLDSSLNWDTRISWTPQFLKAQNLTFSADILNVLDSKTAVDLSTAGVSTYASGRQFWLDVSMKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1369 [H]

Homologues:

Organism=Escherichia coli, GI1787771, Length=790, Percent_Identity=86.2025316455696, Blast_Score=1437, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug [H]

EC number: NA

Molecular weight: Translated: 89689; Mature: 89689

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVLIPGVILCGADLAVAAEDNEKYTPFFEQMTVYAPVPVPVNGNTHYTSESIERLPTG
CCCEECCCEEEECCCEEEEECCCCCCCCHHHCEEEEECCEEECCCCCCCCHHHHHHCCCC
NGNISDLLRTNPAVRMDTTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGVSATNNLNPA
CCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC
NESDSSNATNISGMSQGYYLDISLLDNVTVYDSFVPVEFGHFNGGVIDAKIKRFNADDNS
CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECEECEEECCCCCCEEEEEEEEECCCCCE
IKLGYRTTRSDWMTSHIDEKNKNAWNQGSSGSTYYSPEFKKNFYSLSFNQELTDNFGVTA
EEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHCCEEEEECCCHHCCCCCCCC
GFSRRQSDITRADYVSNNGIVEGRAQYKNLIDTALSKFSWFASDTITHDLTFKYTESRRD
CCCCCHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC
YNTSTFPESDREMGNKSYGVAWDMDYQLAKAKLHTTLGWDHISDYTRHDHDIWYTEDVCT
CCCCCCCCCHHHCCCCCCCEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEEECCCCC
YGDIRGRCTRGGLGHISQAIDNYTFKTRLDWQKIEIGNFTHQPYFGAEYIYSDAWTQRHN
CCCCCCEECCCCHHHHHHHHHCCEEEEECCEEEEEECCEECCCCCCCHHEECCHHHHHCC
QSESYQIKSSGIKTNHTIYHKGKGSLGIYNYTLYLADRMSWKNISLMPGLRYDYDTYLKN
CCCCEEEECCCCCCCCEEEECCCCCEEEEEEEEEEEECCCCCCEEECCCCCCCHHHHHCC
TNISPRFMTEWDIFADRSSLITAGYNRYYGGNILDMGLRDIRNSWTESLSGNKTLTRYED
CCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHH
LKTPYNDELALGLQQKITDNVIARANYVYRSAHDQISKTSHTDSATKTTITEYNNDGTTK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCE
THSFNLSFELAEPLQVSQFAINPQIVFSYIKSKGNLRLNSGYEETNTGDNKVVYNGNLVS
EEEEEEEEEECCCCEEEHEECCHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCEEE
YDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLTWQDARKARIQLGKTNSQYQSQYADY
ECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCHHCCEEEEECCCCHHHHHHHHHH
KQYVDEKLDSSLNWDTRISWTPQFLKAQNLTFSADILNVLDSKTAVDLSTAGVSTYASGR
HHHHHHHHCCCCCCCEEEECCHHHHHHCCCEEHHHHHHHHCCCCEEEEECCCCHHCCCCC
QFWLDVSMKF
EEEEEEEECC
>Mature Secondary Structure
MKRVLIPGVILCGADLAVAAEDNEKYTPFFEQMTVYAPVPVPVNGNTHYTSESIERLPTG
CCCEECCCEEEECCCEEEEECCCCCCCCHHHCEEEEECCEEECCCCCCCCHHHHHHCCCC
NGNISDLLRTNPAVRMDTTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGVSATNNLNPA
CCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC
NESDSSNATNISGMSQGYYLDISLLDNVTVYDSFVPVEFGHFNGGVIDAKIKRFNADDNS
CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECEECEEECCCCCCEEEEEEEEECCCCCE
IKLGYRTTRSDWMTSHIDEKNKNAWNQGSSGSTYYSPEFKKNFYSLSFNQELTDNFGVTA
EEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHCCEEEEECCCHHCCCCCCCC
GFSRRQSDITRADYVSNNGIVEGRAQYKNLIDTALSKFSWFASDTITHDLTFKYTESRRD
CCCCCHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC
YNTSTFPESDREMGNKSYGVAWDMDYQLAKAKLHTTLGWDHISDYTRHDHDIWYTEDVCT
CCCCCCCCCHHHCCCCCCCEEECCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEEECCCCC
YGDIRGRCTRGGLGHISQAIDNYTFKTRLDWQKIEIGNFTHQPYFGAEYIYSDAWTQRHN
CCCCCCEECCCCHHHHHHHHHCCEEEEECCEEEEEECCEECCCCCCCHHEECCHHHHHCC
QSESYQIKSSGIKTNHTIYHKGKGSLGIYNYTLYLADRMSWKNISLMPGLRYDYDTYLKN
CCCCEEEECCCCCCCCEEEECCCCCEEEEEEEEEEEECCCCCCEEECCCCCCCHHHHHCC
TNISPRFMTEWDIFADRSSLITAGYNRYYGGNILDMGLRDIRNSWTESLSGNKTLTRYED
CCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHH
LKTPYNDELALGLQQKITDNVIARANYVYRSAHDQISKTSHTDSATKTTITEYNNDGTTK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCE
THSFNLSFELAEPLQVSQFAINPQIVFSYIKSKGNLRLNSGYEETNTGDNKVVYNGNLVS
EEEEEEEEEECCCCEEEHEECCHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCEEE
YDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLTWQDARKARIQLGKTNSQYQSQYADY
ECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCHHCCEEEEECCCCHHHHHHHHHH
KQYVDEKLDSSLNWDTRISWTPQFLKAQNLTFSADILNVLDSKTAVDLSTAGVSTYASGR
HHHHHHHHCCCCCCCEEEECCHHHHHHCCCEEHHHHHHHHCCCCEEEEECCCCHHCCCCC
QFWLDVSMKF
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]