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The map label for this gene is ynfC [H]

Identifier: 218548876

GI number: 218548876

Start: 1556474

End: 1557184

Strand: Direct

Name: ynfC [H]

Synonym: EFER_1521

Alternate gene names: 218548876

Gene position: 1556474-1557184 (Clockwise)

Preceding gene: 218548874

Following gene: 218548879

Centisome position: 33.92

GC content: 41.77

Gene sequence:

>711_bases
ATGAAAAAACAATTATTACTGAGTGGGTTGTGTATAGTGCTTAGTGGTTGTGACAACGTCACACCATCGGTTTCTTTTGC
TCCAGAAATGGCCAGTTTCTCTAATGAATTTGATTTTGACCCTTTGCGTGGTCCGGTGAAAACGTTCACGCAGACGCTGA
TAAGTGAAGAAGGTAAAGTCGAAAAACGTGTCAGTGGCACGCTTTCTGAAGAGGGCTGTTTTGATACTCTTGAGTTACTT
GATCTTGAGCATAACTCGGTTGTGGCATTAATTCTGGATGCCAATTATTACCTTGATGCAGAAACACTGGAGAAAAAAAT
ACGTTTGCAGGGGAATTGTCAGTTAGCTGAACTGCCTGCTGCCGGGCTGGTTTGGGAAATGAACGATAAAGAATTTCTTA
CGCGAGCCAGTGGTAAAAACATTCGCATTGAGTATCGTTACGATAACGAAGGCTACCCCATTGGAAAGACGTCTACTAAA
GCAGAGACGGTTTTCGCAGTTAACCTGCAACCTTCAACCGATCCGTTAAAAAAACTCGATTACACCGCCCAACAAACCTT
CAATGGCAAAGCCATCGGAAGCTCAAAACAATACTGTGATTATGACAAATTTGCTAATCCGGTCAGTTGTGAACTGGTAA
TGATTGATGAAAGTGTAAAACCGACAGTAGAGCGGCTTTACACCATCAAATATGATATTGAGTACTATTAA

Upstream 100 bases:

>100_bases
TACTCCTTTAATCAATATATTATGCAGATCATAGCATTTATCGTGTAAATTAATGTATTTGCTCTATTATTGATGCCTAC
CTTCTTGTTACGGCGTAAAA

Downstream 100 bases:

>100_bases
AAAGTTATTGCGCAGTAGGTTTCAATAGACTTGATCCCGGTTGCTTGTGCTCTGCCAGATACTGATGCTGGAAGATACAC
ATTCGGATGGTATTGCGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKKQLLLSGLCIVLSGCDNVTPSVSFAPEMASFSNEFDFDPLRGPVKTFTQTLISEEGKVEKRVSGTLSEEGCFDTLELL
DLEHNSVVALILDANYYLDAETLEKKIRLQGNCQLAELPAAGLVWEMNDKEFLTRASGKNIRIEYRYDNEGYPIGKTSTK
AETVFAVNLQPSTDPLKKLDYTAQQTFNGKAIGSSKQYCDYDKFANPVSCELVMIDESVKPTVERLYTIKYDIEYY

Sequences:

>Translated_236_residues
MKKQLLLSGLCIVLSGCDNVTPSVSFAPEMASFSNEFDFDPLRGPVKTFTQTLISEEGKVEKRVSGTLSEEGCFDTLELL
DLEHNSVVALILDANYYLDAETLEKKIRLQGNCQLAELPAAGLVWEMNDKEFLTRASGKNIRIEYRYDNEGYPIGKTSTK
AETVFAVNLQPSTDPLKKLDYTAQQTFNGKAIGSSKQYCDYDKFANPVSCELVMIDESVKPTVERLYTIKYDIEYY
>Mature_236_residues
MKKQLLLSGLCIVLSGCDNVTPSVSFAPEMASFSNEFDFDPLRGPVKTFTQTLISEEGKVEKRVSGTLSEEGCFDTLELL
DLEHNSVVALILDANYYLDAETLEKKIRLQGNCQLAELPAAGLVWEMNDKEFLTRASGKNIRIEYRYDNEGYPIGKTSTK
AETVFAVNLQPSTDPLKKLDYTAQQTFNGKAIGSSKQYCDYDKFANPVSCELVMIDESVKPTVERLYTIKYDIEYY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0257 family [H]

Homologues:

Organism=Escherichia coli, GI87081939, Length=236, Percent_Identity=63.9830508474576, Blast_Score=328, Evalue=2e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010646
- ProDom:   PD120112 [H]

Pfam domain/function: PF06788 UPF0257 [H]

EC number: NA

Molecular weight: Translated: 26513; Mature: 26513

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQLLLSGLCIVLSGCDNVTPSVSFAPEMASFSNEFDFDPLRGPVKTFTQTLISEEGKV
CCCHHHHHCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCH
EKRVSGTLSEEGCFDTLELLDLEHNSVVALILDANYYLDAETLEKKIRLQGNCQLAELPA
HHHHCCCCCCCCCHHHHHHEECCCCCEEEEEEECCEEECHHHHHHHHEECCCCEEEECCC
AGLVWEMNDKEFLTRASGKNIRIEYRYDNEGYPIGKTSTKAETVFAVNLQPSTDPLKKLD
CCEEEEECCHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHC
YTAQQTFNGKAIGSSKQYCDYDKFANPVSCELVMIDESVKPTVERLYTIKYDIEYY
CHHHHCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCHHHHEEEEEEEEEEEC
>Mature Secondary Structure
MKKQLLLSGLCIVLSGCDNVTPSVSFAPEMASFSNEFDFDPLRGPVKTFTQTLISEEGKV
CCCHHHHHCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCH
EKRVSGTLSEEGCFDTLELLDLEHNSVVALILDANYYLDAETLEKKIRLQGNCQLAELPA
HHHHCCCCCCCCCHHHHHHEECCCCCEEEEEEECCEEECHHHHHHHHEECCCCEEEECCC
AGLVWEMNDKEFLTRASGKNIRIEYRYDNEGYPIGKTSTKAETVFAVNLQPSTDPLKKLD
CCEEEEECCHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHC
YTAQQTFNGKAIGSSKQYCDYDKFANPVSCELVMIDESVKPTVERLYTIKYDIEYY
CHHHHCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCHHHHEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA