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The map label for this gene is ydjZ [H]

Identifier: 218548680

GI number: 218548680

Start: 1352693

End: 1353397

Strand: Reverse

Name: ydjZ [H]

Synonym: EFER_1314

Alternate gene names: 218548680

Gene position: 1353397-1352693 (Counterclockwise)

Preceding gene: 218548681

Following gene: 218548679

Centisome position: 29.49

GC content: 50.78

Gene sequence:

>705_bases
ATGAGAGATAAAAACCGTAAAATGTGGCTCTGGCGTGGCGTCATTATCATCTTGTTAATTGTTGCGCTGCTCGCATGGGC
GCTGATTCCCGGCGTCCGTGAGTTTATTAACAGCAGCCTTGTAGCCTTTGCCGCCGTGGATCAACAAGGCATTGAACGCT
TTATTGCGTCTTACGGCACGCAGGCTGCACTGGTCTCATTCTTTTTAATGATCTTACAGGCCATTGCTGCACCGCTGCCT
GCGTTTTTAATTACCTTTGCCAATGCGTCGCTGTTTGGCGCGTTCTGGGGCGGCTTGCTGTCGTGGACCAGTTCGATGGC
GGGCGCGGCGCTGTGCTTTTTTATCGCCAGAGTGATGGGCCGCGAAGTGGTGGAAAAATTAACCGGTAAAACCGTGCTTG
ACAGTATGGACGGCTTTTTCGCTCGCTACGGCAAACACACTATCCTGGTATGCCGGTTATTGCCTTTTGTCCCTTTCGAT
CCAATCAGCTATGCTGCCGGTTTGACGTCAATACGTTTTCGTTCATTTTTTATCGCCACCGGGCTTGGTCAGTTACCGGC
GACTATTGTTTATTCCTGGGCGGGCAGCATGTTAACGGGGGGTACCTTCTGGTTTGTCACCGGACTGTTTATTCTGTTTG
CCCTGACCGTGGTGATTTATATGGCGAAGAAAATATGGCTTGAACGCCAGAAGAGGAATGCCTGA

Upstream 100 bases:

>100_bases
GTTTATTCTTATTCAGCTTGCTAAATGCTACGCCCGTTATAAACAAGTGGCACTGACCACTTCTGATAAAACCTCTTTAA
CCGAACAACAAAGATGAAAG

Downstream 100 bases:

>100_bases
TGGGTTTACCACCGCTTAGCAAAATTCCTTTAAGTTTACGTCCGCAGGCGTGGCTGCATCGTCGCCATTACGGCGAGGTG
CTAAGTCCAATTCGCTGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRDKNRKMWLWRGVIIILLIVALLAWALIPGVREFINSSLVAFAAVDQQGIERFIASYGTQAALVSFFLMILQAIAAPLP
AFLITFANASLFGAFWGGLLSWTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFARYGKHTILVCRLLPFVPFD
PISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTVVIYMAKKIWLERQKRNA

Sequences:

>Translated_234_residues
MRDKNRKMWLWRGVIIILLIVALLAWALIPGVREFINSSLVAFAAVDQQGIERFIASYGTQAALVSFFLMILQAIAAPLP
AFLITFANASLFGAFWGGLLSWTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFARYGKHTILVCRLLPFVPFD
PISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTVVIYMAKKIWLERQKRNA
>Mature_234_residues
MRDKNRKMWLWRGVIIILLIVALLAWALIPGVREFINSSLVAFAAVDQQGIERFIASYGTQAALVSFFLMILQAIAAPLP
AFLITFANASLFGAFWGGLLSWTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFARYGKHTILVCRLLPFVPFD
PISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTVVIYMAKKIWLERQKRNA

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI1788049, Length=234, Percent_Identity=89.3162393162393, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI87081964, Length=165, Percent_Identity=28.4848484848485, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25946; Mature: 25946

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDKNRKMWLWRGVIIILLIVALLAWALIPGVREFINSSLVAFAAVDQQGIERFIASYGT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QAALVSFFLMILQAIAAPLPAFLITFANASLFGAFWGGLLSWTSSMAGAALCFFIARVMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REVVEKLTGKTVLDSMDGFFARYGKHTILVCRLLPFVPFDPISYAAGLTSIRFRSFFIAT
HHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
GLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTVVIYMAKKIWLERQKRNA
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRDKNRKMWLWRGVIIILLIVALLAWALIPGVREFINSSLVAFAAVDQQGIERFIASYGT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QAALVSFFLMILQAIAAPLPAFLITFANASLFGAFWGGLLSWTSSMAGAALCFFIARVMG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REVVEKLTGKTVLDSMDGFFARYGKHTILVCRLLPFVPFDPISYAAGLTSIRFRSFFIAT
HHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
GLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTVVIYMAKKIWLERQKRNA
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]