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The map label for this gene is ynjB [H]

Identifier: 218548678

GI number: 218548678

Start: 1350969

End: 1352135

Strand: Reverse

Name: ynjB [H]

Synonym: EFER_1312

Alternate gene names: 218548678

Gene position: 1352135-1350969 (Counterclockwise)

Preceding gene: 218548679

Following gene: 218548677

Centisome position: 29.47

GC content: 54.24

Gene sequence:

>1167_bases
ATGCGCCATTGTGGGTGGTTGCTGGGATTGTTATCGCTGTTTTCTCTGGCAACACATGCCAGTGACTGGCAGGAAGTTAA
AAATGAGGCCAAAGGGCAAACCGTCTGGTTTAACGCCTGGGGCGGCGATACCGCAATTAACCGCTATCTCGACTGGGTTA
GCGGCGAGATGAAAACCCATTATGATATAAACCTGAAGATTGTCCGCCTGGCGGATGCCGCAGATGCGGTGAAGCGCATT
CAGACCGAAGCCGCAGCCGGGCGCGAGACAGGCGGTTCGGTGGATCTGCTCTGGGTGAACGGCGAAAACTTCCGCACCTT
AAAAGAGGCCAATTTACTGCAAACCGGCTGGGCTGAGACTCTGCCAAACTGGCGTTATGTCGATACACAACTGCCGGTAC
GGGAAGATTTTTCTGTACCTGTCGAAGGCGCAGAATCGCCGTGGGGCGGCGCACAACTGACGTTTATCGCCCGCCGCGAT
GTTACACCACTGCCACCACAAACACCGCAAGACTTACTGGAATTTGCTAAAGCCAATCCTGGCACGGTTACCTATCCGCG
CCCGCCAGACTTTACTGGCACCGCATTTCTTGAACAGTTACTGATTATGCTGACGCCAGATCCCGCAGCATTAAAAGAAG
CGCCGAACGATGCGACTTTCGCCCGTATCACTGCGCCCTTGTGGCAATATCTTGATGCGCTGCATCCGTATTTATGGCGC
GAAGGAAAGGATTTCCCACCTTCGCCCGCGCGGATGGATGCTCTACTGAAAGCTGGCACATTGCGCCTGTCGCTGACCTT
TAATCCTGCACATGCCCAGCAAAAAATCGCCAGTGGCGATTTGCCGGCAAGCAGTTACAGTTTTGGTTTTAACGAGGGGA
TGATTGGCAACGTGCATTTTGTCACCATTCCTGCTAACGCGAATGCCAGTGCTGCGGCGAAGGTTGTCGCCAATTTCCTG
CTCTCACCCGATGCGCAACTGCGTAAAGCAGACCCTGCTGTCTGGGGCGATCCTTCGGTTCTCGATCCGCAAAAACTGCC
TGACGGACAGCGCGAAACTTTACAATCAAGAATGCCGCAGGATCTGCCGCCGGTACTGGCTGAACCGCACGCAGGTTGGG
TAAATGCGCTGGAACAAGAATGGCTACACCGTTACGGTACGCATTAA

Upstream 100 bases:

>100_bases
GATCGGCCTGCAAAATCTGTCAGCCCGTTTTAATTCTGCCATGGACATTCCCGCTCAGGGGCTGTGCCGTATTCCTGAAA
AACGTTCTTAAGGAGAGATG

Downstream 100 bases:

>100_bases
TATTGTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCTCACGCTGATATCGCCTGCTTTG
TCGTTGGCACCCTGGCAGGC

Product: ABC transporter solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MRHCGWLLGLLSLFSLATHASDWQEVKNEAKGQTVWFNAWGGDTAINRYLDWVSGEMKTHYDINLKIVRLADAADAVKRI
QTEAAAGRETGGSVDLLWVNGENFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPVEGAESPWGGAQLTFIARRD
VTPLPPQTPQDLLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPNDATFARITAPLWQYLDALHPYLWR
EGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFNEGMIGNVHFVTIPANANASAAAKVVANFL
LSPDAQLRKADPAVWGDPSVLDPQKLPDGQRETLQSRMPQDLPPVLAEPHAGWVNALEQEWLHRYGTH

Sequences:

>Translated_388_residues
MRHCGWLLGLLSLFSLATHASDWQEVKNEAKGQTVWFNAWGGDTAINRYLDWVSGEMKTHYDINLKIVRLADAADAVKRI
QTEAAAGRETGGSVDLLWVNGENFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPVEGAESPWGGAQLTFIARRD
VTPLPPQTPQDLLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPNDATFARITAPLWQYLDALHPYLWR
EGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFNEGMIGNVHFVTIPANANASAAAKVVANFL
LSPDAQLRKADPAVWGDPSVLDPQKLPDGQRETLQSRMPQDLPPVLAEPHAGWVNALEQEWLHRYGTH
>Mature_388_residues
MRHCGWLLGLLSLFSLATHASDWQEVKNEAKGQTVWFNAWGGDTAINRYLDWVSGEMKTHYDINLKIVRLADAADAVKRI
QTEAAAGRETGGSVDLLWVNGENFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPVEGAESPWGGAQLTFIARRD
VTPLPPQTPQDLLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPNDATFARITAPLWQYLDALHPYLWR
EGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFNEGMIGNVHFVTIPANANASAAAKVVANFL
LSPDAQLRKADPAVWGDPSVLDPQKLPDGQRETLQSRMPQDLPPVLAEPHAGWVNALEQEWLHRYGTH

Specific function: Unknown

COG id: COG4134

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081966, Length=388, Percent_Identity=96.9072164948454, Blast_Score=721, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42861; Mature: 42861

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHCGWLLGLLSLFSLATHASDWQEVKNEAKGQTVWFNAWGGDTAINRYLDWVSGEMKTH
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE
YDINLKIVRLADAADAVKRIQTEAAAGRETGGSVDLLWVNGENFRTLKEANLLQTGWAET
EEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCHHHH
LPNWRYVDTQLPVREDFSVPVEGAESPWGGAQLTFIARRDVTPLPPQTPQDLLEFAKANP
CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCC
GTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPNDATFARITAPLWQYLDALHPYLWR
CEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
EGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFNEGMIGNVHF
CCCCCCCCHHHHHHHHHCCEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
VTIPANANASAAAKVVANFLLSPDAQLRKADPAVWGDPSVLDPQKLPDGQRETLQSRMPQ
EEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCC
DLPPVLAEPHAGWVNALEQEWLHRYGTH
CCCCHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRHCGWLLGLLSLFSLATHASDWQEVKNEAKGQTVWFNAWGGDTAINRYLDWVSGEMKTH
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE
YDINLKIVRLADAADAVKRIQTEAAAGRETGGSVDLLWVNGENFRTLKEANLLQTGWAET
EEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCHHHH
LPNWRYVDTQLPVREDFSVPVEGAESPWGGAQLTFIARRDVTPLPPQTPQDLLEFAKANP
CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCCC
GTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPNDATFARITAPLWQYLDALHPYLWR
CEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
EGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKIASGDLPASSYSFGFNEGMIGNVHF
CCCCCCCCHHHHHHHHHCCEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
VTIPANANASAAAKVVANFLLSPDAQLRKADPAVWGDPSVLDPQKLPDGQRETLQSRMPQ
EEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCC
DLPPVLAEPHAGWVNALEQEWLHRYGTH
CCCCHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10806384 [H]