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The map label for this gene is ynjC [H]

Identifier: 218548677

GI number: 218548677

Start: 1349461

End: 1350951

Strand: Reverse

Name: ynjC [H]

Synonym: EFER_1311

Alternate gene names: 218548677

Gene position: 1350951-1349461 (Counterclockwise)

Preceding gene: 218548678

Following gene: 218548676

Centisome position: 29.44

GC content: 56.61

Gene sequence:

>1491_bases
ATGGTGGCGGTGATTTATGCACCGCTGATCCCGGCAGCTCTCACGCTGATATCGCCTGCTTTGTCGTTGGCACCCTGGCA
GGCGTTATTTGCCGATCCGCAGTTACCGCAGGCCTTACTGGCAACGCTGGTATCGACAACCATCGCGGCGCTCGGCGCAT
TGACGATTGCCCTGCTGGTAATTGTGGCGCTGTGGCCTGGACCGAAATGGCAGCGTATGTGCGCCCGTCTGCCGTGGCTG
CTCGCCATTCCCCATGTTGCTTTTGCCACCAGCGCCCTGTTGCTGGTTGCTGACGGAGGGCTGCTTTATGACTATTTCCC
GTATTTCACTCCGCCAATGGACAAATTGGGTATTGGGCTGGGCCTCACCCTGGCGGTGAAAGAAAGCGCATTTCTGCTGT
GGATCTTAGCGGCAGTATTGAGCGAAAAACGGCTGTTGCAGCAAGTTATTGTGCTGGATTCACTGGGCTACAGCCGCTGG
CAATGTTTGAAGTGGCTGCTTTTGCCCTCCGTCGCGCCTGCGCTGGCAATGGCGATGCTGGCGATTGTCGCCTGGTCGCT
GTCGGTCGTGGATGTGGCGATTATTCTTGGGCCAGGTAATCCACCGACGCTGGCGGTAATTAGCTGGCAGTGGTTAACTC
AGGGCGACGCCGATCAACAAGCGAAAGGCGCACTCGCCAGCCTGCTGCTGATGCTGTTACTCGCCGCCTACGTTTTGCTG
GGCTATCTGCTATGGCGTAGCTGGCGGCGTACTATTCCCCGCGTAGATGGCGTTCGTAAGCCCGCCACGCCTTTATTACC
CGGCAATACACTGGCGAGTTTTTTACCCTTAACCGGTGTGCTCTGTGTGGCTCTGCTGGCGATCCTCGCGGATCAGTCGA
CGATCAATAGTGAAGCGCTCATCAATAGCCTGACGATGGGACTGGTGGCGACATTCATCGCTTTGGTTCTGTTGCTGCTG
TGGCTGGAATGGGGGTCACAGTGTCGCCAGTTGTGGTTATGGTTGCCCATTTTATTACCGGCACTGCCGCTGGTCGCGGG
CCAGTACACGCTGGCGCTATGGATGAACGTAGATGGGCGCTGGACAGCGGTGGTCTGGGGGCATCTGCTGTGGGTGATGC
CGTGGATGCTGTTTATCCTGCAACCCGCCTGGCAGCGCATTGATTCGCGGTTAATTTTGATTGCGCAAACGCTGGGTTGG
TCACGGGCCAAAATCTTCTTTTACGTGAAATGCCCGCTTATGCTGCGCCCTGCATTGATTGCCTTCGCTGTCGGATTTTC
AGTGAGTATTGCGCAGTATATGCCGACGCTGTGGTTGGGCGCGGGCCGTTTTCCGACACTCACCACCGAAGCGGTAGCGT
TAAGTAGCGGTGGCAGTAACGGTATTCTCGCTGCCCAGGCCCTTTGGCAACTGCTATTACCGCTTATTATTTTTGCCCTG
ACCGCCCTGCTTGCAAAATGGGTAGGTTATGTCAGACAAGGACTCCGCTAA

Upstream 100 bases:

>100_bases
TGCCGCCGGTACTGGCTGAACCGCACGCAGGTTGGGTAAATGCGCTGGAACAAGAATGGCTACACCGTTACGGTACGCAT
TAATATTGTTGCTGTGGGCG

Downstream 100 bases:

>100_bases
TGCTCTGCGTGAAAGATGTTTCGCTACGTTTGCCTGAAAGGCCTTTGCTGACAAACGTTAACTTTACGGTCAATAAAGGT
GACATTGTCACGTTAATGGG

Product: ABC transporter membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MVAVIYAPLIPAALTLISPALSLAPWQALFADPQLPQALLATLVSTTIAALGALTIALLVIVALWPGPKWQRMCARLPWL
LAIPHVAFATSALLLVADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRW
QCLKWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQAKGALASLLLMLLLAAYVLL
GYLLWRSWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVALLAILADQSTINSEALINSLTMGLVATFIALVLLLL
WLEWGSQCRQLWLWLPILLPALPLVAGQYTLALWMNVDGRWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGW
SRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
TALLAKWVGYVRQGLR

Sequences:

>Translated_496_residues
MVAVIYAPLIPAALTLISPALSLAPWQALFADPQLPQALLATLVSTTIAALGALTIALLVIVALWPGPKWQRMCARLPWL
LAIPHVAFATSALLLVADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRW
QCLKWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQAKGALASLLLMLLLAAYVLL
GYLLWRSWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVALLAILADQSTINSEALINSLTMGLVATFIALVLLLL
WLEWGSQCRQLWLWLPILLPALPLVAGQYTLALWMNVDGRWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGW
SRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
TALLAKWVGYVRQGLR
>Mature_496_residues
MVAVIYAPLIPAALTLISPALSLAPWQALFADPQLPQALLATLVSTTIAALGALTIALLVIVALWPGPKWQRMCARLPWL
LAIPHVAFATSALLLVADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRW
QCLKWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQAKGALASLLLMLLLAAYVLL
GYLLWRSWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVALLAILADQSTINSEALINSLTMGLVATFIALVLLLL
WLEWGSQCRQLWLWLPILLPALPLVAGQYTLALWMNVDGRWTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGW
SRAKIFFYVKCPLMLRPALIAFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
TALLAKWVGYVRQGLR

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=496, Percent_Identity=94.9596774193548, Blast_Score=799, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 54146; Mature: 54146

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAVIYAPLIPAALTLISPALSLAPWQALFADPQLPQALLATLVSTTIAALGALTIALLV
CEEEEEHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLVADGGLLYDYFPYFTPPMDKLGIGL
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCHHHCCCCCCCCHHHHCCCC
GLTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRWQCLKWLLLPSVAPALAMAML
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQAKGALASLLLMLLLAAYVLL
HHHHHHHHHHHEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GYLLWRSWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVALLAILADQSTINSEAL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
INSLTMGLVATFIALVLLLLWLEWGSQCRQLWLWLPILLPALPLVAGQYTLALWMNVDGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
WTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPALI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCEEEEEEEECHHHHHHHHH
AFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
TALLAKWVGYVRQGLR
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVAVIYAPLIPAALTLISPALSLAPWQALFADPQLPQALLATLVSTTIAALGALTIALLV
CEEEEEHHHHHHHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IVALWPGPKWQRMCARLPWLLAIPHVAFATSALLLVADGGLLYDYFPYFTPPMDKLGIGL
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCHHHCCCCCCCCHHHHCCCC
GLTLAVKESAFLLWILAAVLSEKRLLQQVIVLDSLGYSRWQCLKWLLLPSVAPALAMAML
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
AIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQAKGALASLLLMLLLAAYVLL
HHHHHHHHHHHEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GYLLWRSWRRTIPRVDGVRKPATPLLPGNTLASFLPLTGVLCVALLAILADQSTINSEAL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
INSLTMGLVATFIALVLLLLWLEWGSQCRQLWLWLPILLPALPLVAGQYTLALWMNVDGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
WTAVVWGHLLWVMPWMLFILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPALI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCEEEEEEEECHHHHHHHHH
AFAVGFSVSIAQYMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
TALLAKWVGYVRQGLR
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]