Definition Escherichia fergusonii ATCC 35469 chromosome, complete genome.
Accession NC_011740
Length 4,588,711

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The map label for this gene is ynjD [H]

Identifier: 218548676

GI number: 218548676

Start: 1348808

End: 1349461

Strand: Reverse

Name: ynjD [H]

Synonym: EFER_1310

Alternate gene names: 218548676

Gene position: 1349461-1348808 (Counterclockwise)

Preceding gene: 218548677

Following gene: 218548675

Centisome position: 29.41

GC content: 51.53

Gene sequence:

>654_bases
ATGCTCTGCGTGAAAGATGTTTCGCTACGTTTGCCTGAAAGGCCTTTGCTGACAAACGTTAACTTTACGGTCAATAAAGG
TGACATTGTCACGTTAATGGGGCCCTCAGGCTGTGGTAAATCCTCGCTGTTTTCATGGATGATTGGTGCGCTGGCAGGAC
AGTTTTCTTGTACAGGGGAGCTATGGCTTAATGAGCAACGGATTGACATGCTACCCACCGCACAGCGTCAGATTGGCATT
CTTTTCCAGGATGCACTGTTATTTGACCAGTTCAGCGTCGGGCAAAATTTACTGCTGGCGCTACCGGCGACACTTAAGGG
GAATGCCCGACGTAATGCCGTGAATGATGCGCTTGAACGGACAGGGCTTGGCGGAACTTTTCATCAGGATCCGGCGACAT
TATCGGGCGGTCAGCGAGCGCGGGTAGCCTTGCTACGTGCCCTTCTCGCCCAGCCTAAAGCGTTAATACTGGATGAGCCG
TTCAGCCGTCTTGATGTGGCTCTGCGCGATAATTTTCGCCAGTGGGTGTTCAGCGAAGTTCGCGAACTGGCGATCCCCGT
CGTTCAGGTAACGCACGATATCCAGGATGTTCCTCCTGATAGTTCTGTTCTGGATATGGCGCAGTGGTCAGAAAATTACA
ACAAACTGCGATAA

Upstream 100 bases:

>100_bases
CTGCCCAGGCCCTTTGGCAACTGCTATTACCGCTTATTATTTTTGCCCTGACCGCCCTGCTTGCAAAATGGGTAGGTTAT
GTCAGACAAGGACTCCGCTA

Downstream 100 bases:

>100_bases
CGCAAAGTTTTTCCCAATGTGTCAGTTCAGAATGGCGCACTCAAAACTACAATGTCGGGATTTTCGATGAAACGTGTTTC
TCAAATGACCGCGCTGGCAA

Product: sulfate/thiosulfate ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLCVKDVSLRLPERPLLTNVNFTVNKGDIVTLMGPSGCGKSSLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERTGLGGTFHQDPATLSGGQRARVALLRALLAQPKALILDEP
FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDIQDVPPDSSVLDMAQWSENYNKLR

Sequences:

>Translated_217_residues
MLCVKDVSLRLPERPLLTNVNFTVNKGDIVTLMGPSGCGKSSLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERTGLGGTFHQDPATLSGGQRARVALLRALLAQPKALILDEP
FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDIQDVPPDSSVLDMAQWSENYNKLR
>Mature_217_residues
MLCVKDVSLRLPERPLLTNVNFTVNKGDIVTLMGPSGCGKSSLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERTGLGGTFHQDPATLSGGQRARVALLRALLAQPKALILDEP
FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDIQDVPPDSSVLDMAQWSENYNKLR

Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]

COG id: COG4136

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI46592915, Length=174, Percent_Identity=30.4597701149425, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI46592964, Length=174, Percent_Identity=30.4597701149425, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI46592978, Length=174, Percent_Identity=30.4597701149425, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI46592956, Length=174, Percent_Identity=30.4597701149425, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI46592971, Length=174, Percent_Identity=30.4597701149425, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI46592898, Length=174, Percent_Identity=30.4597701149425, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI27881501, Length=182, Percent_Identity=28.021978021978, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI30795238, Length=182, Percent_Identity=28.021978021978, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI116734710, Length=162, Percent_Identity=30.2469135802469, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI27262624, Length=156, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI27262626, Length=156, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI9961252, Length=183, Percent_Identity=30.6010928961749, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI4505771, Length=183, Percent_Identity=30.6010928961749, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=93.5483870967742, Blast_Score=413, Evalue=1e-117,
Organism=Escherichia coli, GI1790467, Length=176, Percent_Identity=36.3636363636364, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI87081709, Length=196, Percent_Identity=33.6734693877551, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1786253, Length=197, Percent_Identity=34.5177664974619, Blast_Score=107, Evalue=4e-25,
Organism=Escherichia coli, GI1788761, Length=186, Percent_Identity=34.4086021505376, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI87081791, Length=179, Percent_Identity=35.195530726257, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786563, Length=197, Percent_Identity=33.502538071066, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=34.010152284264, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI87082267, Length=177, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1787370, Length=184, Percent_Identity=32.0652173913043, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787712, Length=178, Percent_Identity=33.7078651685393, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787029, Length=200, Percent_Identity=32, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1789873, Length=190, Percent_Identity=33.6842105263158, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789593, Length=198, Percent_Identity=29.7979797979798, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786872, Length=200, Percent_Identity=35, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1790544, Length=182, Percent_Identity=31.8681318681319, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1789672, Length=171, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87081834, Length=198, Percent_Identity=30.8080808080808, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=28.5087719298246, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789962, Length=200, Percent_Identity=35, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1786698, Length=210, Percent_Identity=30.4761904761905, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=32.3383084577114, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1786398, Length=185, Percent_Identity=34.0540540540541, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994943, Length=201, Percent_Identity=29.3532338308458, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789032, Length=184, Percent_Identity=28.804347826087, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787089, Length=193, Percent_Identity=33.160621761658, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788897, Length=208, Percent_Identity=29.3269230769231, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788506, Length=190, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994883, Length=191, Percent_Identity=30.3664921465969, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI145693107, Length=215, Percent_Identity=31.1627906976744, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789586, Length=201, Percent_Identity=30.3482587064677, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1787112, Length=213, Percent_Identity=30.5164319248826, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787164, Length=196, Percent_Identity=33.1632653061224, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788165, Length=201, Percent_Identity=30.3482587064677, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787500, Length=189, Percent_Identity=28.042328042328, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787105, Length=220, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789891, Length=193, Percent_Identity=30.5699481865285, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789864, Length=216, Percent_Identity=26.3888888888889, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87081782, Length=193, Percent_Identity=30.5699481865285, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1786319, Length=187, Percent_Identity=28.8770053475936, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1787792, Length=205, Percent_Identity=26.3414634146341, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790162, Length=207, Percent_Identity=28.0193236714976, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787758, Length=213, Percent_Identity=25.8215962441315, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790739, Length=189, Percent_Identity=31.7460317460317, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI48995001, Length=209, Percent_Identity=30.1435406698565, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1789963, Length=189, Percent_Identity=26.984126984127, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786345, Length=201, Percent_Identity=30.8457711442786, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994997, Length=190, Percent_Identity=30, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786803, Length=184, Percent_Identity=27.7173913043478, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1786981, Length=182, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790525, Length=192, Percent_Identity=27.0833333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788210, Length=206, Percent_Identity=28.1553398058252, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786975, Length=204, Percent_Identity=26.4705882352941, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=176, Percent_Identity=35.2272727272727, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71996809, Length=165, Percent_Identity=33.9393939393939, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193211017, Length=165, Percent_Identity=33.9393939393939, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193211015, Length=165, Percent_Identity=33.9393939393939, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193202349, Length=173, Percent_Identity=32.3699421965318, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=176, Percent_Identity=33.5227272727273, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=174, Percent_Identity=32.7586206896552, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=183, Percent_Identity=29.5081967213115, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=168, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115533592, Length=173, Percent_Identity=32.9479768786127, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=173, Percent_Identity=31.7919075144509, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=181, Percent_Identity=29.2817679558011, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=185, Percent_Identity=33.5135135135135, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=234, Percent_Identity=29.4871794871795, Blast_Score=74, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323217, Length=220, Percent_Identity=28.1818181818182, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24659289, Length=178, Percent_Identity=33.7078651685393, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45552437, Length=188, Percent_Identity=35.1063829787234, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24585557, Length=188, Percent_Identity=35.1063829787234, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI19920532, Length=167, Percent_Identity=32.3353293413174, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24580930, Length=167, Percent_Identity=32.3353293413174, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI281363262, Length=172, Percent_Identity=31.3953488372093, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24653245, Length=172, Percent_Identity=31.3953488372093, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24581191, Length=168, Percent_Identity=29.7619047619048, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581189, Length=168, Percent_Identity=29.7619047619048, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581193, Length=168, Percent_Identity=29.7619047619048, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581195, Length=168, Percent_Identity=29.7619047619048, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076682, Length=156, Percent_Identity=30.1282051282051, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI161076684, Length=156, Percent_Identity=30.1282051282051, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24581617, Length=156, Percent_Identity=30.1282051282051, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24581615, Length=156, Percent_Identity=30.1282051282051, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85726357, Length=164, Percent_Identity=30.4878048780488, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17647959, Length=162, Percent_Identity=30.8641975308642, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24015; Mature: 24015

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MLCVKDVSLRLPERPLLTNVNFTVNKGDIVTLMGPSGCGKSSLFSWMIGALAGQFSCTGE
CCCCCCCCCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER
EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
TGLGGTFHQDPATLSGGQRARVALLRALLAQPKALILDEPFSRLDVALRDNFRQWVFSEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
RELAIPVVQVTHDIQDVPPDSSVLDMAQWSENYNKLR
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLCVKDVSLRLPERPLLTNVNFTVNKGDIVTLMGPSGCGKSSLFSWMIGALAGQFSCTGE
CCCCCCCCCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHH
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER
EEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
TGLGGTFHQDPATLSGGQRARVALLRALLAQPKALILDEPFSRLDVALRDNFRQWVFSEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
RELAIPVVQVTHDIQDVPPDSSVLDMAQWSENYNKLR
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]