Click here to switch to the map view.

The map label for this gene is potB [H]

Identifier: 218548655

GI number: 218548655

Start: 1328025

End: 1328852

Strand: Reverse

Name: potB [H]

Synonym: EFER_1289

Alternate gene names: 218548655

Gene position: 1328852-1328025 (Counterclockwise)

Preceding gene: 218548656

Following gene: 218548654

Centisome position: 28.96

GC content: 51.69

Gene sequence:

>828_bases
GTGATTGTCACTATTGTCGGTTGGCTTGTGTTGTTTGTCTTTCTGCCCAACCTGATGATCATTGGCACCAGCTTTTTGAC
CCGCGACGACGCCAGTTTCGTCAAAATGGTCTTTACGCTGGATAACTACACGCGACTGCTCGATCCGCTTTATTTTGAAG
TGCTATTGCACTCGCTGAATATGGCGCTGATCGCCACCCTCGCCTGCCTGGTGCTGGGCTACCCGTTTGCCTGGTTTCTG
GCAAAGCTGCCACACAAGGTGCGTCCGCTGCTGCTGTTTCTGCTGATTGTTCCGTTCTGGACCAACTCATTGATTCGTAT
CTACGGGCTGAAAATTTTCCTCAGCACCAAAGGCTATCTTAACGAGCTTTTGCTCTGGCTGGGCGTTATCGATACACCAA
TTCGCATCATGTTCACGCCCAGTGCGGTGATAATCGGTCTGGTTTACATTCTGCTGCCGTTTATGGTGATGCCGCTGTAC
TCCAGTATCGAAAAACTGGATAAGCCGTTGCTGGAGGCGGCGCGCGATCTCGGTGCCAGCAAGTTGCAGACCTTTATCCG
CATCATTATCCCACTGACGATGCCGGGGATTATTGCCGGATGTCTGCTGGTGATGCTGCCAGCGATGGGCCTGTTCTATG
TGTCCGACCTGATGGGCGGTGCGAAAAACCTGCTGATCGGTAACGTCATAAAGGTACAGTTCCTCAATATTCGTGACTGG
CCGTTTGGTGCAGCCACCAGCATTACGCTGACTATCGTAATGGGCCTGATGTTGCTGGTTTACTGGCGCGCTTCTCGTTT
GCTGAATAAGAAGGTGGAACTCGAATGA

Upstream 100 bases:

>100_bases
GACTTTGACCACTCTCTCGACCAAAAAATGGCCATTAATTGGGTAGAAAGCTGGGAGGTCGTACTGGCTGATGAAGAACA
CAAGTAAGTTCCAGAATGTA

Downstream 100 bases:

>100_bases
TCGGTCGACTGCTTCGCGGCGGTTTTATGACCGCTATCTACGCGTATCTGTATATTCCAATCATTATTTTGATTGTGAAT
TCCTTTAACAGCTCGCGCTT

Product: spermidine/putrescine ABC transporter membrane protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFL
AKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNELLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLY
SSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDW
PFGAATSITLTIVMGLMLLVYWRASRLLNKKVELE

Sequences:

>Translated_275_residues
MIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFL
AKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNELLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLY
SSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDW
PFGAATSITLTIVMGLMLLVYWRASRLLNKKVELE
>Mature_275_residues
MIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFL
AKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNELLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLY
SSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDW
PFGAATSITLTIVMGLMLLVYWRASRLLNKKVELE

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1176

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component I

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787369, Length=275, Percent_Identity=99.6363636363636, Blast_Score=538, Evalue=1e-154,
Organism=Escherichia coli, GI1787080, Length=215, Percent_Identity=47.4418604651163, Blast_Score=200, Evalue=9e-53,
Organism=Escherichia coli, GI1787713, Length=266, Percent_Identity=29.3233082706767, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1786980, Length=185, Percent_Identity=30.8108108108108, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788764, Length=198, Percent_Identity=26.2626262626263, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31029; Mature: 31029

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLLDPLYFEVLLHSLN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYL
HHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHH
NELLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGAS
HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDW
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEECCC
PFGAATSITLTIVMGLMLLVYWRASRLLNKKVELE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLLDPLYFEVLLHSLN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYL
HHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHH
NELLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGAS
HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
KLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDW
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEECCC
PFGAATSITLTIVMGLMLLVYWRASRLLNKKVELE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]